Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm13889-201ENSMUST00000099689 1386 ntBASIC27,29■■□□□ 1,96
Col11a1Q61245 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC27,29■■□□□ 1,96
Col11a1Q61245 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC27,28■■□□□ 1,96
Col11a1Q61245 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC27,28■■□□□ 1,96
Col11a1Q61245 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC27,28■■□□□ 1,96
Col11a1Q61245 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC27,28■■□□□ 1,96
Col11a1Q61245 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC27,28■■□□□ 1,96
Col11a1Q61245 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC27,27■■□□□ 1,96
Col11a1Q61245 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC27,27■■□□□ 1,96
Col11a1Q61245 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC27,27■■□□□ 1,96
Col11a1Q61245 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC27,27■■□□□ 1,96
Col11a1Q61245 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC27,26■■□□□ 1,95
Col11a1Q61245 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC27,26■■□□□ 1,95
Col11a1Q61245 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC27,26■■□□□ 1,95
Col11a1Q61245 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC27,25■■□□□ 1,95
Col11a1Q61245 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC27,25■■□□□ 1,95
Col11a1Q61245 Gm15039-201ENSMUST00000118914 875 ntBASIC27,25■■□□□ 1,95
Col11a1Q61245 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC27,25■■□□□ 1,95
Col11a1Q61245 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC27,25■■□□□ 1,95
Col11a1Q61245 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC27,25■■□□□ 1,95
Col11a1Q61245 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC27,25■■□□□ 1,95
Col11a1Q61245 Gm5921-201ENSMUST00000075898 882 ntBASIC27,25■■□□□ 1,95
Col11a1Q61245 Gm5067-201ENSMUST00000170449 1009 ntBASIC27,24■■□□□ 1,95
Col11a1Q61245 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC27,24■■□□□ 1,95
Col11a1Q61245 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC27,24■■□□□ 1,95
Col11a1Q61245 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC27,23■■□□□ 1,95
Col11a1Q61245 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC27,23■■□□□ 1,95
Col11a1Q61245 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC27,23■■□□□ 1,95
Col11a1Q61245 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC27,21■■□□□ 1,95
Col11a1Q61245 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC27,21■■□□□ 1,95
Col11a1Q61245 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC27,2■■□□□ 1,95
Col11a1Q61245 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC27,2■■□□□ 1,95
Col11a1Q61245 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC27,2■■□□□ 1,94
Col11a1Q61245 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC27,19■■□□□ 1,94
Col11a1Q61245 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC27,19■■□□□ 1,94
Col11a1Q61245 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC27,19■■□□□ 1,94
Col11a1Q61245 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC27,19■■□□□ 1,94
Col11a1Q61245 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC27,18■■□□□ 1,94
Col11a1Q61245 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC27,18■■□□□ 1,94
Col11a1Q61245 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC27,17■■□□□ 1,94
Col11a1Q61245 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC27,17■■□□□ 1,94
Col11a1Q61245 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC27,16■■□□□ 1,94
Col11a1Q61245 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC27,15■■□□□ 1,94
Col11a1Q61245 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC27,15■■□□□ 1,94
Col11a1Q61245 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC27,15■■□□□ 1,94
Col11a1Q61245 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC27,15■■□□□ 1,94
Col11a1Q61245 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC27,14■■□□□ 1,94
Col11a1Q61245 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC27,13■■□□□ 1,93
Col11a1Q61245 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC27,13■■□□□ 1,93
Col11a1Q61245 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC27,12■■□□□ 1,93
Col11a1Q61245 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC27,11■■□□□ 1,93
Col11a1Q61245 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC27,11■■□□□ 1,93
Col11a1Q61245 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC27,09■■□□□ 1,93
Col11a1Q61245 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC27,08■■□□□ 1,93
Col11a1Q61245 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC27,08■■□□□ 1,93
Col11a1Q61245 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC27,07■■□□□ 1,92
Col11a1Q61245 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC27,07■■□□□ 1,92
Col11a1Q61245 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC27,07■■□□□ 1,92
Col11a1Q61245 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC27,07■■□□□ 1,92
Col11a1Q61245 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC27,06■■□□□ 1,92
Col11a1Q61245 Gm9812-201ENSMUST00000061934 968 ntBASIC27,06■■□□□ 1,92
Col11a1Q61245 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC27,06■■□□□ 1,92
Col11a1Q61245 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC27,06■■□□□ 1,92
Col11a1Q61245 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC27,04■■□□□ 1,92
Col11a1Q61245 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC27,04■■□□□ 1,92
Col11a1Q61245 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC27,04■■□□□ 1,92
Col11a1Q61245 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC27,03■■□□□ 1,92
Col11a1Q61245 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC27,03■■□□□ 1,92
Col11a1Q61245 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC27,03■■□□□ 1,92
Col11a1Q61245 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC27,02■■□□□ 1,92
Col11a1Q61245 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC27,02■■□□□ 1,92
Col11a1Q61245 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC27,02■■□□□ 1,92
Col11a1Q61245 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC27,01■■□□□ 1,91
Col11a1Q61245 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC27,01■■□□□ 1,91
Col11a1Q61245 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC27,01■■□□□ 1,91
Col11a1Q61245 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC27,01■■□□□ 1,91
Col11a1Q61245 Gm5522-201ENSMUST00000189483 1242 ntBASIC27■■□□□ 1,91
Col11a1Q61245 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1,91
Col11a1Q61245 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC27■■□□□ 1,91
Col11a1Q61245 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC27■■□□□ 1,91
Col11a1Q61245 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26,99■■□□□ 1,91
Col11a1Q61245 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC26,99■■□□□ 1,91
Col11a1Q61245 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC26,99■■□□□ 1,91
Col11a1Q61245 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC26,98■■□□□ 1,91
Col11a1Q61245 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC26,97■■□□□ 1,91
Col11a1Q61245 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC26,97■■□□□ 1,91
Col11a1Q61245 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC26,97■■□□□ 1,91
Col11a1Q61245 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC26,96■■□□□ 1,91
Col11a1Q61245 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC26,96■■□□□ 1,91
Col11a1Q61245 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC26,96■■□□□ 1,91
Col11a1Q61245 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC26,96■■□□□ 1,91
Col11a1Q61245 Gm15546-201ENSMUST00000122095 826 ntBASIC26,95■■□□□ 1,91
Col11a1Q61245 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC26,95■■□□□ 1,91
Col11a1Q61245 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC26,94■■□□□ 1,9
Col11a1Q61245 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC26,94■■□□□ 1,9
Col11a1Q61245 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC26,94■■□□□ 1,9
Col11a1Q61245 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC26,94■■□□□ 1,9
Col11a1Q61245 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC26,93■■□□□ 1,9
Col11a1Q61245 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC26,93■■□□□ 1,9
Col11a1Q61245 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC26,93■■□□□ 1,9
Retrieved 100 of 76,532 protein–RNA pairs in 11,5 ms