Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.61
Trav8d-1Q5R1H8 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trav8d-1Q5R1H8 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trav8d-1Q5R1H8 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trav8d-1Q5R1H8 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav8d-1Q5R1H8 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav8d-1Q5R1H8 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trav8d-1Q5R1H8 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Trav8d-1Q5R1H8 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav8d-1Q5R1H8 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav8d-1Q5R1H8 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC18.81■□□□□ 0.6
Trav8d-1Q5R1H8 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav8d-1Q5R1H8 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav8d-1Q5R1H8 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.81■□□□□ 0.6
Trav8d-1Q5R1H8 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav8d-1Q5R1H8 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
Trav8d-1Q5R1H8 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav8d-1Q5R1H8 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav8d-1Q5R1H8 Gm43863-201ENSMUST00000203822 1192 ntBASIC18.8■□□□□ 0.6
Trav8d-1Q5R1H8 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav8d-1Q5R1H8 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav8d-1Q5R1H8 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trav8d-1Q5R1H8 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav8d-1Q5R1H8 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav8d-1Q5R1H8 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Trav8d-1Q5R1H8 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC18.79■□□□□ 0.6
Trav8d-1Q5R1H8 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
Trav8d-1Q5R1H8 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav8d-1Q5R1H8 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trav8d-1Q5R1H8 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trav8d-1Q5R1H8 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav8d-1Q5R1H8 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav8d-1Q5R1H8 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav8d-1Q5R1H8 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.78■□□□□ 0.6
Trav8d-1Q5R1H8 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav8d-1Q5R1H8 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC18.78■□□□□ 0.6
Trav8d-1Q5R1H8 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav8d-1Q5R1H8 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav8d-1Q5R1H8 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav8d-1Q5R1H8 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
Trav8d-1Q5R1H8 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav8d-1Q5R1H8 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav8d-1Q5R1H8 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav8d-1Q5R1H8 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.59
Trav8d-1Q5R1H8 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.76■□□□□ 0.59
Trav8d-1Q5R1H8 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC18.76■□□□□ 0.59
Trav8d-1Q5R1H8 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav8d-1Q5R1H8 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav8d-1Q5R1H8 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav8d-1Q5R1H8 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Trav8d-1Q5R1H8 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trav8d-1Q5R1H8 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav8d-1Q5R1H8 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav8d-1Q5R1H8 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav8d-1Q5R1H8 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav8d-1Q5R1H8 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Trav8d-1Q5R1H8 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trav8d-1Q5R1H8 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trav8d-1Q5R1H8 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav8d-1Q5R1H8 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC18.73■□□□□ 0.59
Trav8d-1Q5R1H8 AC157572.2-201ENSMUST00000226970 908 ntBASIC18.73■□□□□ 0.59
Trav8d-1Q5R1H8 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav8d-1Q5R1H8 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Trav8d-1Q5R1H8 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav8d-1Q5R1H8 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav8d-1Q5R1H8 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav8d-1Q5R1H8 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Trav8d-1Q5R1H8 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav8d-1Q5R1H8 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC18.72■□□□□ 0.59
Trav8d-1Q5R1H8 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trav8d-1Q5R1H8 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav8d-1Q5R1H8 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav8d-1Q5R1H8 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trav8d-1Q5R1H8 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trav8d-1Q5R1H8 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav8d-1Q5R1H8 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Trav8d-1Q5R1H8 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav8d-1Q5R1H8 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav8d-1Q5R1H8 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav8d-1Q5R1H8 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav8d-1Q5R1H8 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trav8d-1Q5R1H8 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Trav8d-1Q5R1H8 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trav8d-1Q5R1H8 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Trav8d-1Q5R1H8 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav8d-1Q5R1H8 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav8d-1Q5R1H8 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC18.68■□□□□ 0.58
Trav8d-1Q5R1H8 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav8d-1Q5R1H8 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav8d-1Q5R1H8 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Trav8d-1Q5R1H8 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trav8d-1Q5R1H8 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav8d-1Q5R1H8 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav8d-1Q5R1H8 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav8d-1Q5R1H8 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav8d-1Q5R1H8 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav8d-1Q5R1H8 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav8d-1Q5R1H8 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav8d-1Q5R1H8 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC18.66■□□□□ 0.58
Trav8d-1Q5R1H8 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms