Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Cdx1P18111 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Cdx1P18111 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdx1P18111 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Cdx1P18111 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdx1P18111 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
Cdx1P18111 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdx1P18111 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
Cdx1P18111 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdx1P18111 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cdx1P18111 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdx1P18111 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Cdx1P18111 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdx1P18111 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Cdx1P18111 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdx1P18111 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdx1P18111 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC18.48■□□□□ 0.55
Cdx1P18111 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdx1P18111 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdx1P18111 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdx1P18111 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdx1P18111 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdx1P18111 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdx1P18111 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdx1P18111 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdx1P18111 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cdx1P18111 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Cdx1P18111 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC18.45■□□□□ 0.54
Cdx1P18111 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cdx1P18111 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC18.44■□□□□ 0.54
Cdx1P18111 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdx1P18111 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cdx1P18111 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC18.44■□□□□ 0.54
Cdx1P18111 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
Cdx1P18111 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdx1P18111 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Cdx1P18111 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Cdx1P18111 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
Cdx1P18111 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC18.42■□□□□ 0.54
Cdx1P18111 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Cdx1P18111 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdx1P18111 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cdx1P18111 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Cdx1P18111 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cdx1P18111 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cdx1P18111 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Cdx1P18111 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cdx1P18111 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx1P18111 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx1P18111 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx1P18111 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx1P18111 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Cdx1P18111 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx1P18111 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
Cdx1P18111 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx1P18111 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx1P18111 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx1P18111 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Cdx1P18111 Gm13042-201ENSMUST00000119244 1955 ntBASIC18.39■□□□□ 0.53
Cdx1P18111 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdx1P18111 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdx1P18111 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdx1P18111 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
Cdx1P18111 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdx1P18111 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdx1P18111 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdx1P18111 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Cdx1P18111 Notumos-201ENSMUST00000151998 2659 ntBASIC18.36■□□□□ 0.53
Cdx1P18111 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdx1P18111 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdx1P18111 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cdx1P18111 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC18.35■□□□□ 0.53
Cdx1P18111 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cdx1P18111 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Cdx1P18111 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Cdx1P18111 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cdx1P18111 Gm38160-201ENSMUST00000193090 2499 ntBASIC18.34■□□□□ 0.53
Cdx1P18111 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cdx1P18111 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Cdx1P18111 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cdx1P18111 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Cdx1P18111 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdx1P18111 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdx1P18111 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC18.33■□□□□ 0.52
Cdx1P18111 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Cdx1P18111 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdx1P18111 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC18.32■□□□□ 0.52
Cdx1P18111 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Cdx1P18111 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC18.32■□□□□ 0.52
Cdx1P18111 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Cdx1P18111 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdx1P18111 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx1P18111 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Cdx1P18111 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx1P18111 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdx1P18111 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdx1P18111 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Cdx1P18111 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdx1P18111 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdx1P18111 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms