Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
Pcdh1F7BJK1 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC20.91■□□□□ 0.94
Pcdh1F7BJK1 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Pcdh1F7BJK1 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Pcdh1F7BJK1 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdh1F7BJK1 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdh1F7BJK1 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdh1F7BJK1 Tdp2-203ENSMUST00000223804 1136 ntBASIC20.9■□□□□ 0.94
Pcdh1F7BJK1 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdh1F7BJK1 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Pcdh1F7BJK1 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Pcdh1F7BJK1 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Pcdh1F7BJK1 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Pcdh1F7BJK1 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Pcdh1F7BJK1 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Pcdh1F7BJK1 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Pcdh1F7BJK1 Particl-201ENSMUST00000205370 1560 ntBASIC20.88■□□□□ 0.93
Pcdh1F7BJK1 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Pcdh1F7BJK1 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Pcdh1F7BJK1 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Pcdh1F7BJK1 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Pcdh1F7BJK1 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Pcdh1F7BJK1 Gm30023-201ENSMUST00000197970 889 ntBASIC20.85■□□□□ 0.93
Pcdh1F7BJK1 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Pcdh1F7BJK1 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Pcdh1F7BJK1 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.84■□□□□ 0.93
Pcdh1F7BJK1 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Pcdh1F7BJK1 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Pcdh1F7BJK1 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Pcdh1F7BJK1 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC20.83■□□□□ 0.93
Pcdh1F7BJK1 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC20.83■□□□□ 0.93
Pcdh1F7BJK1 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC20.83■□□□□ 0.93
Pcdh1F7BJK1 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Pcdh1F7BJK1 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Pcdh1F7BJK1 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.82■□□□□ 0.92
Pcdh1F7BJK1 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Pcdh1F7BJK1 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
Pcdh1F7BJK1 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC20.81■□□□□ 0.92
Pcdh1F7BJK1 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Pcdh1F7BJK1 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcdh1F7BJK1 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcdh1F7BJK1 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.8■□□□□ 0.92
Pcdh1F7BJK1 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcdh1F7BJK1 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Pcdh1F7BJK1 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Pcdh1F7BJK1 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Pcdh1F7BJK1 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Pcdh1F7BJK1 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Pcdh1F7BJK1 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcdh1F7BJK1 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Pcdh1F7BJK1 Gm24970-201ENSMUST00000175582 82 ntBASIC20.78■□□□□ 0.92
Pcdh1F7BJK1 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Pcdh1F7BJK1 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Pcdh1F7BJK1 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.78■□□□□ 0.92
Pcdh1F7BJK1 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Pcdh1F7BJK1 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Pcdh1F7BJK1 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Pcdh1F7BJK1 Gm9397-201ENSMUST00000200125 605 ntBASIC20.76■□□□□ 0.91
Pcdh1F7BJK1 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Pcdh1F7BJK1 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Pcdh1F7BJK1 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Pcdh1F7BJK1 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcdh1F7BJK1 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcdh1F7BJK1 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.74■□□□□ 0.91
Pcdh1F7BJK1 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcdh1F7BJK1 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcdh1F7BJK1 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdh1F7BJK1 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdh1F7BJK1 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdh1F7BJK1 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Pcdh1F7BJK1 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdh1F7BJK1 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Pcdh1F7BJK1 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdh1F7BJK1 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC20.72■□□□□ 0.91
Pcdh1F7BJK1 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.72■□□□□ 0.91
Pcdh1F7BJK1 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdh1F7BJK1 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdh1F7BJK1 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdh1F7BJK1 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdh1F7BJK1 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdh1F7BJK1 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdh1F7BJK1 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdh1F7BJK1 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdh1F7BJK1 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Pcdh1F7BJK1 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
Pcdh1F7BJK1 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdh1F7BJK1 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdh1F7BJK1 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdh1F7BJK1 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdh1F7BJK1 Gm45855-201ENSMUST00000212546 880 ntBASIC20.7■□□□□ 0.9
Pcdh1F7BJK1 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdh1F7BJK1 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdh1F7BJK1 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdh1F7BJK1 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Pcdh1F7BJK1 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC20.68■□□□□ 0.9
Pcdh1F7BJK1 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdh1F7BJK1 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdh1F7BJK1 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdh1F7BJK1 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdh1F7BJK1 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms