Protein–RNA interactions for Protein: A0A075B6B9

Trav6d-5, T cell receptor alpha variable 6D-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-5A0A075B6B9 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Trav6d-5A0A075B6B9 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trav6d-5A0A075B6B9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trav6d-5A0A075B6B9 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Trav6d-5A0A075B6B9 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.82■□□□□ 0.6
Trav6d-5A0A075B6B9 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav6d-5A0A075B6B9 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav6d-5A0A075B6B9 Gm37847-201ENSMUST00000192163 1497 ntBASIC18.81■□□□□ 0.6
Trav6d-5A0A075B6B9 Gm31748-201ENSMUST00000194938 1497 ntBASIC18.81■□□□□ 0.6
Trav6d-5A0A075B6B9 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trav6d-5A0A075B6B9 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav6d-5A0A075B6B9 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav6d-5A0A075B6B9 Particl-201ENSMUST00000205370 1560 ntBASIC18.81■□□□□ 0.6
Trav6d-5A0A075B6B9 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav6d-5A0A075B6B9 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trav6d-5A0A075B6B9 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav6d-5A0A075B6B9 Gm42699-201ENSMUST00000198104 1657 ntBASIC18.79■□□□□ 0.6
Trav6d-5A0A075B6B9 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6d-5A0A075B6B9 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6d-5A0A075B6B9 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6d-5A0A075B6B9 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6d-5A0A075B6B9 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav6d-5A0A075B6B9 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.77■□□□□ 0.6
Trav6d-5A0A075B6B9 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Trav6d-5A0A075B6B9 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trav6d-5A0A075B6B9 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav6d-5A0A075B6B9 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6d-5A0A075B6B9 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6d-5A0A075B6B9 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6d-5A0A075B6B9 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav6d-5A0A075B6B9 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Trav6d-5A0A075B6B9 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Trav6d-5A0A075B6B9 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav6d-5A0A075B6B9 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav6d-5A0A075B6B9 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav6d-5A0A075B6B9 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trav6d-5A0A075B6B9 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC18.74■□□□□ 0.59
Trav6d-5A0A075B6B9 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6d-5A0A075B6B9 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6d-5A0A075B6B9 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6d-5A0A075B6B9 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Trav6d-5A0A075B6B9 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC18.73■□□□□ 0.59
Trav6d-5A0A075B6B9 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6d-5A0A075B6B9 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6d-5A0A075B6B9 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6d-5A0A075B6B9 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6d-5A0A075B6B9 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6d-5A0A075B6B9 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Trav6d-5A0A075B6B9 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Trav6d-5A0A075B6B9 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6d-5A0A075B6B9 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6d-5A0A075B6B9 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6d-5A0A075B6B9 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Trav6d-5A0A075B6B9 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6d-5A0A075B6B9 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
Trav6d-5A0A075B6B9 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Trav6d-5A0A075B6B9 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav6d-5A0A075B6B9 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trav6d-5A0A075B6B9 Gm24804-201ENSMUST00000174982 85 ntBASIC18.7■□□□□ 0.58
Trav6d-5A0A075B6B9 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav6d-5A0A075B6B9 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav6d-5A0A075B6B9 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-5A0A075B6B9 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-5A0A075B6B9 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-5A0A075B6B9 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-5A0A075B6B9 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trav6d-5A0A075B6B9 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-5A0A075B6B9 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6d-5A0A075B6B9 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6d-5A0A075B6B9 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6d-5A0A075B6B9 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC18.68■□□□□ 0.58
Trav6d-5A0A075B6B9 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6d-5A0A075B6B9 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6d-5A0A075B6B9 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trav6d-5A0A075B6B9 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Trav6d-5A0A075B6B9 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trav6d-5A0A075B6B9 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav6d-5A0A075B6B9 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
Trav6d-5A0A075B6B9 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav6d-5A0A075B6B9 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Trav6d-5A0A075B6B9 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC18.66■□□□□ 0.58
Trav6d-5A0A075B6B9 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trav6d-5A0A075B6B9 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6d-5A0A075B6B9 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC18.65■□□□□ 0.58
Trav6d-5A0A075B6B9 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
Trav6d-5A0A075B6B9 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6d-5A0A075B6B9 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav6d-5A0A075B6B9 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav6d-5A0A075B6B9 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav6d-5A0A075B6B9 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC18.64■□□□□ 0.57
Trav6d-5A0A075B6B9 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Trav6d-5A0A075B6B9 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6d-5A0A075B6B9 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Trav6d-5A0A075B6B9 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6d-5A0A075B6B9 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6d-5A0A075B6B9 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Trav6d-5A0A075B6B9 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6d-5A0A075B6B9 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav6d-5A0A075B6B9 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav6d-5A0A075B6B9 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms