Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 AL353796.1-201ENST00000561542 3241 ntBASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 RNVU1-3-201ENST00000364313 161 ntBASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 Z82188.1-201ENST00000436709 154 ntBASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 AC073587.1-201ENST00000447093 876 ntBASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 RNU7-121P-201ENST00000516604 62 ntBASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 AC133555.2-201ENST00000550213 292 ntBASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 AC004825.2-201ENST00000616634 455 ntBASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 AC110491.1-201ENST00000562191 2010 ntBASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 KCNMB3P1-202ENST00000493696 3389 ntBASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
CCDC61Q9Y6R9 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AC068769.1-201ENST00000474767 2426 ntBASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 RN7SKP104-201ENST00000362605 328 ntBASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 RNU1-146P-201ENST00000364015 165 ntBASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 RNU6-1144P-201ENST00000384247 104 ntBASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 Y_RNA.542-201ENST00000384641 111 ntBASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 KRT8P51-201ENST00000438938 274 ntBASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AC108161.1-201ENST00000461060 402 ntBASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AC103783.1-201ENST00000520506 373 ntBASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AP000769.2-201ENST00000602344 396 ntBASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 CCL14-204ENST00000622526 472 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AC073869.8-201ENST00000641806 335 ntBASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC61Q9Y6R9 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 RNU6-263P-201ENST00000363811 107 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 Y_RNA.217-201ENST00000364214 105 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 U8.7-201ENST00000364940 136 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 Y_RNA.420-201ENST00000384043 110 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 RNU6-1179P-201ENST00000384667 107 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 MRPS10P1-201ENST00000448483 130 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 Y_RNA.641-201ENST00000459414 105 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 AC092754.1-201ENST00000472975 479 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 RNU6-914P-201ENST00000516749 109 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 RN7SL356P-201ENST00000582228 248 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 AC060780.2-201ENST00000589047 198 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 B3GNTL1P2-201ENST00000603673 288 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 FAM25E-202ENST00000608562 189 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 AC011603.4-201ENST00000611325 277 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 AC100827.5-201ENST00000615883 426 ntBASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC61Q9Y6R9 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC7.38□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms