Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AL590762.2-201ENST00000395798 571 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 NDUFS5P1-201ENST00000405668 289 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 Y_RNA.594-201ENST00000410373 140 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 RNU2-47P-201ENST00000410649 186 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AC080125.1-201ENST00000414888 684 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 RPL7P37-201ENST00000425095 738 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AC016712.1-201ENST00000431088 378 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 SNAP23P1-201ENST00000433229 246 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 RPL21P112-201ENST00000434403 463 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 PTMAP3-201ENST00000447474 330 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AC005008.1-201ENST00000456151 612 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AC116337.1-201ENST00000509680 687 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AC087854.1-201ENST00000519706 414 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AC123786.2-201ENST00000603459 275 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AC104695.3-201ENST00000604052 296 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 AL445363.3-201ENST00000623080 671 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 U3.53-201ENST00000628922 216 ntBASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 NAA50-211ENST00000630058 177 ntTSL 5 BASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.84□□□□□ -1.47
CHMP3Q9Y3E7 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
CHMP3Q9Y3E7 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC5.84□□□□□ -1.48
CHMP3Q9Y3E7 AL450326.2-201ENST00000421913 1962 ntBASIC5.84□□□□□ -1.48
CHMP3Q9Y3E7 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.84□□□□□ -1.48
CHMP3Q9Y3E7 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.84□□□□□ -1.48
CHMP3Q9Y3E7 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-379P-201ENST00000363813 104 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 RN7SKP224-201ENST00000364140 325 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 SMIM11P1-201ENST00000369586 178 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 Y_RNA.512-201ENST00000384518 102 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 SNORD70.1-201ENST00000391007 85 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 SNORA75.6-201ENST00000391318 127 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 DPH3P2-201ENST00000422618 250 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 C4BPAP2-201ENST00000428434 478 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 AC103987.1-201ENST00000473394 348 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 RN7SL346P-201ENST00000491561 294 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 AC015911.1-201ENST00000495111 156 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-685P-201ENST00000517088 95 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 IGLVIV-53-201ENST00000520107 367 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 DEFB108D-201ENST00000527787 222 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 AP001781.1-201ENST00000530977 207 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 AC106782.4-201ENST00000568264 210 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 MIR4472-2-201ENST00000582069 67 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 MIR4715-201ENST00000584117 79 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 ATP5A1P2-202ENST00000616464 443 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 Z95327.2-201ENST00000414579 1873 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 AC074029.4-201ENST00000624796 1859 ntBASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CHMP3Q9Y3E7 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-328P-201ENST00000390887 106 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 RNU6-1050P-201ENST00000410388 107 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC099336.2-201ENST00000422457 254 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC008267.5-201ENST00000424928 265 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 RPEP3-201ENST00000425462 676 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 OR2AH1P-201ENST00000425717 928 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC004938.1-201ENST00000438468 308 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC099560.2-201ENST00000457554 255 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC117503.1-201ENST00000472241 394 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 RPL36AP41-201ENST00000493820 306 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 RPL23AP55-201ENST00000498163 452 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC107222.1-201ENST00000510899 637 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 RNA5SP249-201ENST00000516127 99 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 Y_RNA.708-201ENST00000516950 96 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 RANP3-201ENST00000530970 276 ntBASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.82□□□□□ -1.48
CHMP3Q9Y3E7 AC105129.1-201ENST00000560250 297 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 147.9 ms