Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 SRP72P2-201ENST00000344851 1979 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 RNU6-769P-201ENST00000384407 104 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 MIR491-201ENST00000384877 84 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 MIR1305-201ENST00000408300 86 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 RNU2-43P-201ENST00000410306 190 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 HMGB1P11-201ENST00000413899 637 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 MTND4P20-201ENST00000424125 869 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 RPL27AP8-201ENST00000424277 446 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC006539.3-201ENST00000454258 129 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 OR6K1P-201ENST00000456766 971 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 RPL7P23-201ENST00000493874 747 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC026427.2-201ENST00000506228 536 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC005178.1-201ENST00000508392 440 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 RNU1-143P-201ENST00000516296 146 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC007954.1-201ENST00000554198 494 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC135628.1-201ENST00000568867 534 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 MIR3200-201ENST00000580767 85 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AP001004.1-201ENST00000582468 324 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 UBE2L4-201ENST00000587688 464 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 PRELID3BP8-201ENST00000604148 295 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC011451.2-201ENST00000604303 598 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 U1.23-201ENST00000610293 146 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 RNU1-68P-201ENST00000615382 146 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 U1.39-201ENST00000621562 146 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AL158801.5-201ENST00000623123 465 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 MIR622-201ENST00000638396 96 ntBASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CPSF3Q9UKF6 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.4□□□□□ -1.86
CPSF3Q9UKF6 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.4□□□□□ -1.86
CPSF3Q9UKF6 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
CPSF3Q9UKF6 RNU6-553P-201ENST00000364047 96 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 SNORA1.3-201ENST00000384676 136 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 RPS3AP24-201ENST00000407896 734 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 AL365203.2-201ENST00000423444 196 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 RPL21P40-201ENST00000428586 483 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 RPL23AP69-201ENST00000431134 458 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 OR4K11P-201ENST00000431829 904 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 AL445567.1-201ENST00000439121 144 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 AC108734.1-201ENST00000439549 399 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 BZW1P2-201ENST00000473537 826 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 MTND1P22-201ENST00000510572 951 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 MRPS36P5-201ENST00000551909 298 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 AL138880.2-201ENST00000616214 239 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 AL356266.1-201ENST00000623311 483 ntBASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.4□□□□□ -1.87
CPSF3Q9UKF6 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 RNU6-114P-201ENST00000384704 105 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 FAT1P1-201ENST00000406588 507 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 RNA5SP107-201ENST00000411358 122 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 LARP1BP3-201ENST00000437229 869 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 MTCYBP39-201ENST00000437562 491 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC112653.1-201ENST00000443851 386 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 RNA5SP310-201ENST00000459084 116 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 RPS4XP22-201ENST00000480755 780 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC034222.1-201ENST00000494052 532 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC090888.1-201ENST00000561335 1141 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC037471.2-201ENST00000564941 598 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC012435.1-202ENST00000568772 240 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AP001429.1-201ENST00000602568 530 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AC106900.2-201ENST00000604994 317 ntBASIC3.39□□□□□ -1.87
CPSF3Q9UKF6 AL158211.4-201ENST00000606988 584 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms