Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 HMGB1P25-201ENST00000468402 607 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
NDE1Q9NXR1 AC104563.1-201ENST00000476147 376 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 COX7A2P2-201ENST00000505291 250 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
NDE1Q9NXR1 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.09□□□□□ -1.91
NDE1Q9NXR1 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.09□□□□□ -1.91
NDE1Q9NXR1 AC023632.4-201ENST00000517783 191 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.09□□□□□ -1.91
NDE1Q9NXR1 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.09□□□□□ -1.91
NDE1Q9NXR1 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.09□□□□□ -1.91
NDE1Q9NXR1 EEF1B2P4-201ENST00000551398 348 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 AC005476.1-201ENST00000554427 397 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 MIR4429-201ENST00000580105 73 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.09□□□□□ -1.91
NDE1Q9NXR1 AL353997.4-201ENST00000586196 166 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
NDE1Q9NXR1 AL451064.1-201ENST00000607718 471 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 AC069234.5-201ENST00000611056 416 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 AC104010.1-201ENST00000616889 150 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 MIR6875-201ENST00000617506 72 ntBASIC3.09□□□□□ -1.91
NDE1Q9NXR1 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
NDE1Q9NXR1 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
NDE1Q9NXR1 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
NDE1Q9NXR1 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.09□□□□□ -1.92
NDE1Q9NXR1 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
NDE1Q9NXR1 CCT4P2-201ENST00000233836 1548 ntBASIC3.09□□□□□ -1.92
NDE1Q9NXR1 FGF7P2-201ENST00000332473 296 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 Y_RNA.194-201ENST00000363985 102 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 RNU6-533P-201ENST00000384144 107 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 Y_RNA.559-201ENST00000384686 107 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 MIR554-201ENST00000384874 96 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 RNU1-101P-201ENST00000391171 127 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 RNA5SP274-201ENST00000410484 108 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 RNU2-47P-201ENST00000410649 186 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AL356583.2-201ENST00000426536 280 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 RPS12P18-201ENST00000442381 270 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 FAM103A2P-201ENST00000444122 354 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 MTCO2P18-201ENST00000457151 658 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 snoU13.8-201ENST00000458890 104 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 snoU13.3-201ENST00000459441 104 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 HMGN2P13-201ENST00000476476 274 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AP004217.1-201ENST00000480579 346 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 CBX3P3-201ENST00000508108 532 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 SAP18P1-201ENST00000512058 390 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AC103843.2-201ENST00000530523 682 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AP000873.5-201ENST00000533906 236 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AC012213.3-201ENST00000577199 777 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AC090615.1-201ENST00000577519 154 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 SNRPGP15-201ENST00000600149 222 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AC112187.2-201ENST00000604345 283 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AC245389.1-201ENST00000605141 529 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AL596245.1-201ENST00000618994 362 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 AC092656.1-203ENST00000624134 423 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 CRYM-AS1-204ENST00000637983 556 ntBASIC3.08□□□□□ -1.92
NDE1Q9NXR1 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
NDE1Q9NXR1 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 RNA5SP258-201ENST00000362750 119 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 OR5H15-201ENST00000383696 930 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 SNORD51-201ENST00000384320 80 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 DEFB108C-201ENST00000400154 252 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 PPIAP31-201ENST00000405422 495 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 RN7SKP202-201ENST00000410439 330 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 AC244098.2-201ENST00000422068 99 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 RPL7P2-201ENST00000427639 268 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 AC109583.1-201ENST00000432156 268 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 AL022238.1-201ENST00000442557 355 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 AL590365.1-201ENST00000450788 243 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 Z82190.1-201ENST00000454534 490 ntBASIC3.07□□□□□ -1.92
NDE1Q9NXR1 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
NDE1Q9NXR1 FABP5P5-201ENST00000515537 406 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms