Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 USP9YP7-201ENST00000436723 430 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC004866.2-201ENST00000438285 481 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 USP9YP32-201ENST00000452432 430 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC021660.1-201ENST00000465006 554 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC022795.1-201ENST00000473808 480 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 NIPA2P2-201ENST00000496376 1083 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC068305.1-201ENST00000497406 726 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 MLLT10P2-201ENST00000506434 249 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC021146.1-201ENST00000511202 716 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 SNORA31.20-201ENST00000517111 133 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC100870.1-201ENST00000522035 505 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AP003072.1-201ENST00000531740 145 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 OR5B10P-201ENST00000532869 642 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 HPRT1P3-201ENST00000539521 576 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC087477.6-201ENST00000559595 843 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 MIR3167-201ENST00000579623 85 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AP000942.4-201ENST00000604811 241 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC006504.8-201ENST00000621046 635 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 YWHAEP7-203ENST00000622054 312 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 AC105074.1-201ENST00000623380 3095 ntBASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LRFN3Q9BTN0 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 TAB3P1-202ENST00000452645 1634 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 RNA5SP175-201ENST00000364275 119 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 RNU6-908P-201ENST00000410160 94 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 RPL7AP73-201ENST00000413490 353 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 SNRPEP10-201ENST00000420249 274 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC016696.1-201ENST00000446949 318 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 RPL32P34-201ENST00000486380 400 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC078817.1-201ENST00000492623 435 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 RNA5SP73-201ENST00000516744 108 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 RNU6-445P-201ENST00000516949 107 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC109635.4-202ENST00000531666 412 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC093027.1-201ENST00000546698 429 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC128657.1-201ENST00000549459 145 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AL162413.1-201ENST00000603198 110 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AL136363.1-201ENST00000605349 337 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC093788.1-201ENST00000609356 927 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 FP236240.3-201ENST00000623061 327 ntBASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LRFN3Q9BTN0 MAPK10-372ENST00000641954 3413 ntBASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 HSPE1P11-201ENST00000339579 310 ntBASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 RNU6-845P-201ENST00000362578 103 ntBASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 RNA5SP167-201ENST00000365461 116 ntBASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 RNU6-108P-201ENST00000365558 107 ntBASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 Y_RNA.394-201ENST00000383942 103 ntBASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 RNU6-767P-201ENST00000384132 107 ntBASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 Y_RNA.481-201ENST00000384373 102 ntBASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LRFN3Q9BTN0 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms