Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC1.27□□□□□ -2.21
VPS13AQ96RL7 RNU1-133P-201ENST00000364867 167 ntBASIC1.26□□□□□ -2.21
VPS13AQ96RL7 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 AC036111.3-201ENST00000526389 112 ntBASIC1.26□□□□□ -2.21
VPS13AQ96RL7 HSPE1P3-201ENST00000559254 309 ntBASIC1.26□□□□□ -2.21
VPS13AQ96RL7 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 Y_RNA.390-201ENST00000383932 102 ntBASIC1.26□□□□□ -2.21
VPS13AQ96RL7 AC007229.1-201ENST00000590455 412 ntBASIC1.26□□□□□ -2.21
VPS13AQ96RL7 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 AC017078.1-201ENST00000416146 368 ntBASIC1.26□□□□□ -2.21
VPS13AQ96RL7 HMGN2P38-201ENST00000423806 265 ntBASIC1.26□□□□□ -2.21
VPS13AQ96RL7 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 NEFMP1-201ENST00000443423 1006 ntBASIC1.26□□□□□ -2.21
VPS13AQ96RL7 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 AP005435.4-201ENST00000529514 284 ntBASIC1.26□□□□□ -2.21
VPS13AQ96RL7 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.26□□□□□ -2.21
VPS13AQ96RL7 RPL31P35-201ENST00000431058 377 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 SNRPGP13-201ENST00000442212 177 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 AC005912.1-201ENST00000495392 255 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.25□□□□□ -2.21
VPS13AQ96RL7 AC011477.1-204ENST00000623416 1325 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.25□□□□□ -2.21
VPS13AQ96RL7 AC007342.9-201ENST00000623877 1385 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
VPS13AQ96RL7 RNU6-198P-201ENST00000384258 104 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 MIR1304-201ENST00000408243 91 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.25□□□□□ -2.21
VPS13AQ96RL7 CFTRP1-201ENST00000456646 183 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 Y_RNA.675-201ENST00000516389 149 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC1.25□□□□□ -2.21
VPS13AQ96RL7 CBX3P2-202ENST00000583365 535 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 GLUD1P4-201ENST00000590914 418 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 AC013553.2-201ENST00000604244 589 ntBASIC1.25□□□□□ -2.21
VPS13AQ96RL7 RWDD4P2-201ENST00000426392 563 ntBASIC1.24□□□□□ -2.21
VPS13AQ96RL7 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.24□□□□□ -2.21
VPS13AQ96RL7 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.24□□□□□ -2.21
VPS13AQ96RL7 RWDD4P1-201ENST00000488019 565 ntBASIC1.24□□□□□ -2.21
VPS13AQ96RL7 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.24□□□□□ -2.21
VPS13AQ96RL7 AL138955.1-201ENST00000622881 1040 ntBASIC1.24□□□□□ -2.21
VPS13AQ96RL7 U6.98-201ENST00000637157 84 ntBASIC1.24□□□□□ -2.21
VPS13AQ96RL7 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
VPS13AQ96RL7 MIR758-201ENST00000390227 88 ntBASIC1.24□□□□□ -2.21
VPS13AQ96RL7 AC007390.1-201ENST00000415722 356 ntBASIC1.24□□□□□ -2.21
VPS13AQ96RL7 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.24□□□□□ -2.21
VPS13AQ96RL7 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.24□□□□□ -2.21
VPS13AQ96RL7 MIR6715B-201ENST00000637172 77 ntBASIC1.24□□□□□ -2.21
VPS13AQ96RL7 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
VPS13AQ96RL7 AC010329.2-201ENST00000595195 2737 ntBASIC1.24□□□□□ -2.21
VPS13AQ96RL7 AC008427.1-201ENST00000503102 655 ntBASIC1.24□□□□□ -2.21
VPS13AQ96RL7 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC1.24□□□□□ -2.21
VPS13AQ96RL7 AC097468.3-201ENST00000607956 456 ntBASIC1.24□□□□□ -2.21
VPS13AQ96RL7 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC1.24□□□□□ -2.21
VPS13AQ96RL7 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC1.23□□□□□ -2.21
VPS13AQ96RL7 RNU1-148P-201ENST00000384472 162 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 USP9YP7-201ENST00000436723 430 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 AL357520.1-201ENST00000441557 453 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 USP9YP32-201ENST00000452432 430 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 AC023790.1-201ENST00000482174 347 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 AC139103.1-201ENST00000534696 1030 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 AC019155.1-201ENST00000382242 574 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 RN7SKP200-201ENST00000410564 320 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 RNA5SP489-201ENST00000410986 109 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 AC073264.1-201ENST00000411508 416 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.23□□□□□ -2.21
VPS13AQ96RL7 RPL7P53-201ENST00000421245 739 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
VPS13AQ96RL7 DUXAP3-201ENST00000603616 594 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 CNOT6LP1-201ENST00000559681 1462 ntBASIC1.23□□□□□ -2.21
VPS13AQ96RL7 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.22□□□□□ -2.21
VPS13AQ96RL7 OR51B8P-201ENST00000449892 769 ntBASIC1.22□□□□□ -2.21
VPS13AQ96RL7 C1GALT1P2-201ENST00000510813 1104 ntBASIC1.22□□□□□ -2.21
VPS13AQ96RL7 AC116447.1-201ENST00000613153 453 ntBASIC1.22□□□□□ -2.21
VPS13AQ96RL7 uc_338.20-201ENST00000621563 178 ntBASIC1.22□□□□□ -2.21
VPS13AQ96RL7 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
VPS13AQ96RL7 RNA5SP239-201ENST00000410218 129 ntBASIC1.22□□□□□ -2.21
VPS13AQ96RL7 AP000873.1-201ENST00000463987 400 ntBASIC1.22□□□□□ -2.21
VPS13AQ96RL7 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC1.22□□□□□ -2.21
VPS13AQ96RL7 RNA5SP330-201ENST00000517096 96 ntBASIC1.22□□□□□ -2.21
VPS13AQ96RL7 AC018690.1-201ENST00000608144 626 ntBASIC1.22□□□□□ -2.21
VPS13AQ96RL7 DUXAP9-208ENST00000622815 614 ntBASIC1.22□□□□□ -2.21
VPS13AQ96RL7 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC1.22□□□□□ -2.21
VPS13AQ96RL7 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
VPS13AQ96RL7 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
VPS13AQ96RL7 HSPE1P11-201ENST00000339579 310 ntBASIC1.22□□□□□ -2.21
VPS13AQ96RL7 AC006499.2-201ENST00000513470 337 ntBASIC1.22□□□□□ -2.21
VPS13AQ96RL7 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.22□□□□□ -2.21
VPS13AQ96RL7 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.22□□□□□ -2.21
VPS13AQ96RL7 AL445213.1-201ENST00000412589 747 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 AC010265.1-201ENST00000513509 211 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 AC090821.2-201ENST00000523552 176 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 AC118942.1-201ENST00000529674 1035 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 MIR3973-201ENST00000579824 107 ntBASIC1.21□□□□□ -2.22
VPS13AQ96RL7 AL137072.1-201ENST00000603444 466 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms