Protein–RNA interactions for Protein: Q8IVW4

CDKL3, Cyclin-dependent kinase-like 3, humanhuman

Predicted RBP Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL3Q8IVW4 AP002371.2-201ENST00000624450 503 ntBASIC2.54□□□□□ -2
CDKL3Q8IVW4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.54□□□□□ -2
CDKL3Q8IVW4 Z99496.1-201ENST00000469424 1477 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CDKL3Q8IVW4 SNORA5B-201ENST00000363786 132 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 SNORA67.1-201ENST00000364749 141 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 U8.8-201ENST00000365399 135 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 RNU6-1257P-201ENST00000384625 110 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 SNORA41-201ENST00000384675 132 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 SNORD65.1-201ENST00000390889 71 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 Y_RNA.578-201ENST00000390903 88 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 MTCO1P56-201ENST00000401674 224 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 RPS4XP7-201ENST00000406274 780 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 RNU6-193P-201ENST00000410977 107 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 RFC5P1-201ENST00000454419 874 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 AC027673.1-201ENST00000456245 405 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 KLRA1P-201ENST00000503499 986 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 RNA5SP320-201ENST00000516263 124 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 SNORA70.16-201ENST00000516390 95 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 MIR4319-201ENST00000577285 85 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 BNIP3P31-201ENST00000604515 566 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 AP003485.1-201ENST00000625093 753 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 AL359693.1-201ENST00000614959 2407 ntBASIC2.53□□□□□ -2
CDKL3Q8IVW4 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CDKL3Q8IVW4 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CDKL3Q8IVW4 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.53□□□□□ -2
CDKL3Q8IVW4 AL365361.1-201ENST00000566942 3481 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AC062016.1-201ENST00000355719 319 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 RNU6-878P-201ENST00000384578 110 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 RNU6-298P-201ENST00000390888 96 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 RNA5SP181-201ENST00000410246 98 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AC007064.1-201ENST00000412238 351 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 LUZP4P1-201ENST00000415420 344 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 MTND4P3-201ENST00000417829 541 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 VN1R10P-201ENST00000447106 875 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AC079776.3-201ENST00000450665 370 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AP001189.2-201ENST00000527320 189 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 LARP7P2-201ENST00000575306 125 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AC011260.1-201ENST00000578420 472 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 DNAJC19P3-201ENST00000594491 331 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AL022099.1-201ENST00000604551 712 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AP001521.1-201ENST00000609150 300 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AC106858.1-201ENST00000637497 429 ntBASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
CDKL3Q8IVW4 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 MIR196B-201ENST00000384852 84 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 RNU6-882P-201ENST00000391025 103 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 RNA5SP354-201ENST00000391247 136 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 AL121871.1-201ENST00000443413 436 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 AC073901.1-201ENST00000462471 408 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 AL049829.1-201ENST00000465411 156 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 AC092757.1-201ENST00000467293 467 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 RBM43P1-201ENST00000476891 1081 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 AC004924.1-201ENST00000480160 781 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 OR4G11P-201ENST00000492842 939 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 AC112206.4-201ENST00000515142 405 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 RNA5SP356-201ENST00000515972 94 ntBASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC2.51□□□□□ -2.01
CDKL3Q8IVW4 AC138915.2-201ENST00000569776 97 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 155.9 ms