Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RPS15AP36-201ENST00000492022 382 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC093752.1-206ENST00000511823 336 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 SNORA70.16-201ENST00000516390 95 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 RNU6-1004P-201ENST00000516584 111 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 ELOCP35-201ENST00000604289 336 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC015967.1-201ENST00000619893 476 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AP003476.1-201ENST00000623984 516 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AP003400.5-201ENST00000624827 617 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC025048.6-202ENST00000627667 438 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 VPS8-228ENST00000628962 207 ntTSL 5 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC087821.2-201ENST00000637086 450 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.26
LINC00643Q86TS7 SNORA51.1-201ENST00000363243 140 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 RNU6-270P-201ENST00000364131 105 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 RNU6-185P-201ENST00000384421 107 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 SNORA8-201ENST00000384574 139 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.27
LINC00643Q86TS7 MIR1294-201ENST00000408503 142 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 RNU6ATAC10P-201ENST00000408635 111 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 RNA5SP425-201ENST00000410336 112 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 SFR1P2-201ENST00000421841 730 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 AL445646.1-201ENST00000431784 216 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC0.9□□□□□ -2.27
LINC00643Q86TS7 FABP5P3-201ENST00000437960 408 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC0.9□□□□□ -2.27
LINC00643Q86TS7 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
LINC00643Q86TS7 AL049873.1-201ENST00000480540 376 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC0.9□□□□□ -2.27
LINC00643Q86TS7 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC0.9□□□□□ -2.27
LINC00643Q86TS7 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.9□□□□□ -2.27
LINC00643Q86TS7 AC023632.4-201ENST00000517783 191 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC0.9□□□□□ -2.27
LINC00643Q86TS7 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC0.9□□□□□ -2.27
LINC00643Q86TS7 MIR3198-2-201ENST00000577868 80 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC0.9□□□□□ -2.27
LINC00643Q86TS7 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC0.9□□□□□ -2.27
LINC00643Q86TS7 AC103810.8-201ENST00000607347 118 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 MIR7975-201ENST00000619350 68 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 MIR6886-201ENST00000619864 61 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 MIR7641-1-201ENST00000627518 61 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 MTND5P28-201ENST00000438005 1594 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 ZNF355P-201ENST00000427301 3216 ntBASIC0.9□□□□□ -2.27
LINC00643Q86TS7 POMP-202ENST00000460403 1428 ntTSL 3 BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 MTND5P6-201ENST00000422338 1798 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 RPL32P3-201ENST00000359025 275 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AL096803.2-201ENST00000450032 677 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AC104689.1-201ENST00000473356 768 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 UBE2Q2P9-201ENST00000490086 202 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 FAM206BP-201ENST00000510179 541 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 MIR892C-201ENST00000516410 77 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 RRN3P3-201ENST00000549207 578 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AL133241.1-201ENST00000556832 487 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AC068135.2-201ENST00000569293 1028 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 ANKRD36BP2-206ENST00000575193 1245 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
LINC00643Q86TS7 BNIP3P25-201ENST00000596023 559 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 AC013444.2-201ENST00000603317 787 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 DPRXP5-201ENST00000604662 539 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 U6.48-201ENST00000618523 106 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 U6.105-201ENST00000637379 88 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 LINC02211-204ENST00000642024 1070 ntBASIC0.89□□□□□ -2.27
LINC00643Q86TS7 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 SNORD26-201ENST00000384147 75 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 RNU6-939P-201ENST00000384634 107 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 EDDM3CP-201ENST00000415977 425 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 AC008173.1-201ENST00000418901 264 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 PPIAP20-201ENST00000449839 135 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 RPS3P1-201ENST00000456781 192 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 RPL32P9-201ENST00000487963 407 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 RPS29P11-201ENST00000496507 171 ntBASIC0.88□□□□□ -2.27
LINC00643Q86TS7 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC0.88□□□□□ -2.27
LINC00643Q86TS7 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms