Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RNU7-187P-201ENST00000458985 68 ntBASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 snoU13.3-201ENST00000459441 104 ntBASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 RN7SL808P-201ENST00000496066 299 ntBASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 RNU6-1143P-201ENST00000516125 104 ntBASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 RN7SKP66-201ENST00000516681 231 ntBASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 RNU7-4P-201ENST00000516961 62 ntBASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 Y_RNA.715-201ENST00000517082 110 ntBASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 RN7SKP40-201ENST00000517211 242 ntBASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 IGLV2-28-201ENST00000520681 304 ntBASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 RPL23AP53-201ENST00000521854 457 ntBASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 AC104623.2-202ENST00000623477 4002 ntBASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
UBE3DQ7Z6J8 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 SMG1P6-201ENST00000532337 2930 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 RNU6-1059P-201ENST00000363752 98 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 Y_RNA.210-201ENST00000364161 110 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 Y_RNA.350-201ENST00000365409 98 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 Y_RNA.396-201ENST00000383949 103 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 RPL21P1-201ENST00000399532 476 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AL078599.1-201ENST00000402075 293 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 RNU6-174P-201ENST00000410406 106 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 RNU4-34P-201ENST00000410431 124 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AC007738.1-201ENST00000413892 348 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AF186996.5-201ENST00000418098 904 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 MRPS18CP6-201ENST00000423587 223 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 RPS15AP10-201ENST00000432472 382 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AC073850.1-201ENST00000449243 255 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 RPSAP50-201ENST00000481955 852 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AC114801.2-201ENST00000503825 781 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 VN1R104P-201ENST00000505115 1009 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 RNU6-120P-201ENST00000516077 103 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 RNA5SP392-201ENST00000516905 112 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 RN7SKP147-201ENST00000517154 244 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 OR5D17P-201ENST00000531492 978 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AC023157.2-201ENST00000540596 141 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 MIR4472-2-201ENST00000582069 67 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 BDH2P1-201ENST00000602288 736 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 ELOCP5-201ENST00000604924 333 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AC005344.1-201ENST00000613391 459 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 EIF3FP1-201ENST00000613970 806 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AC141273.2-201ENST00000618989 130 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 AP001005.3-201ENST00000622049 129 ntBASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
UBE3DQ7Z6J8 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 Y_RNA.314-201ENST00000365114 102 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 RNU6-837P-201ENST00000391056 108 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 SPTLC1P2-201ENST00000407089 121 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 RPL23AP27-201ENST00000415161 451 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 AC108032.1-201ENST00000416706 207 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 PSMD10P3-201ENST00000437000 448 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 RPL23AP31-201ENST00000456160 467 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 RPL37P6-202ENST00000464216 403 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 AC005868.1-201ENST00000536421 331 ntBASIC4.72□□□□□ -1.65
UBE3DQ7Z6J8 LRRC37A5P-203ENST00000580181 585 ntBASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 178.9 ms