Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
FOXF1Q12946 PABPC1P9-201ENST00000426076 1612 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 GDI2P1-201ENST00000429312 1336 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 AL513185.3-201ENST00000433335 1300 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
FOXF1Q12946 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
FOXF1Q12946 Y_RNA.110-201ENST00000363220 99 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 SNORA51.6-201ENST00000384151 125 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 MIR217-201ENST00000384817 110 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 RSL24D1P4-201ENST00000400938 484 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 SNORA11.4-201ENST00000408823 129 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 RN7SKP223-201ENST00000410582 62 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 RNU6-575P-201ENST00000411326 105 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 USP9YP19-201ENST00000412165 485 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 AC092447.6-201ENST00000414578 210 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 TAF13P2-201ENST00000416876 286 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 AL513477.1-202ENST00000417061 214 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXF1Q12946 AC017099.1-201ENST00000448261 1028 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 NDUFA5P7-201ENST00000452914 242 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXF1Q12946 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXF1Q12946 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXF1Q12946 XACT-201ENST00000468762 497 ntTSL 5 BASIC1.95□□□□□ -2.1
FOXF1Q12946 SETP11-201ENST00000473027 690 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.95□□□□□ -2.1
FOXF1Q12946 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
FOXF1Q12946 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC1.95□□□□□ -2.1
FOXF1Q12946 AC011352.3-201ENST00000505162 593 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 BOLA3P3-201ENST00000505182 232 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC1.95□□□□□ -2.1
FOXF1Q12946 RNU6-334P-201ENST00000517072 102 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 RNU1-104P-201ENST00000517280 175 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
FOXF1Q12946 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXF1Q12946 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC1.95□□□□□ -2.1
FOXF1Q12946 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.95□□□□□ -2.1
FOXF1Q12946 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.95□□□□□ -2.1
FOXF1Q12946 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXF1Q12946 MTCYBP27-201ENST00000555160 670 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 MIR1273D-201ENST00000577266 86 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 GLUD1P4-201ENST00000590914 418 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 RPAP2P1-201ENST00000603626 1168 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXF1Q12946 AC107294.1-201ENST00000609524 467 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.95□□□□□ -2.1
FOXF1Q12946 AC040168.1-201ENST00000623594 991 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 ZNF658B-202ENST00000615961 3375 ntBASIC1.95□□□□□ -2.1
FOXF1Q12946 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
FOXF1Q12946 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
FOXF1Q12946 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
FOXF1Q12946 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
FOXF1Q12946 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
FOXF1Q12946 AC135776.4-201ENST00000624300 1904 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 RNA5SP425-201ENST00000410336 112 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 HMGB3P2-201ENST00000411913 584 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 RPL27AP8-201ENST00000424277 446 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 MTCYBP15-201ENST00000433123 1127 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXF1Q12946 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
FOXF1Q12946 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC1.94□□□□□ -2.1
FOXF1Q12946 AL353705.4-201ENST00000449661 238 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 MTCO3P11-201ENST00000455103 774 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 AC104090.1-201ENST00000506341 1171 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXF1Q12946 RNU6-885P-201ENST00000516607 104 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 RNU6-467P-201ENST00000517027 110 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 RN7SKP40-201ENST00000517211 242 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXF1Q12946 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC1.94□□□□□ -2.1
FOXF1Q12946 MEG8-218ENST00000556720 456 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXF1Q12946 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXF1Q12946 GAS5-AS1-201ENST00000602767 694 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 AC005776.1-201ENST00000603164 290 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 NUTF2P8-201ENST00000604593 363 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXF1Q12946 VN1R74P-201ENST00000613259 503 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 AC010378.1-201ENST00000619270 362 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC1.94□□□□□ -2.1
FOXF1Q12946 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC1.94□□□□□ -2.1
FOXF1Q12946 Z82209.1-201ENST00000422141 2135 ntBASIC1.94□□□□□ -2.1
FOXF1Q12946 CKAP2P1-201ENST00000555477 2049 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.93□□□□□ -2.1
FOXF1Q12946 HMGB1P5-201ENST00000255320 642 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 RNA5SP126-201ENST00000365092 109 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 SNORD82-201ENST00000365530 70 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 SNORA48.3-201ENST00000391081 134 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
FOXF1Q12946 AL136372.1-201ENST00000403060 228 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 RNU2-72P-201ENST00000411175 163 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC1.93□□□□□ -2.1
FOXF1Q12946 AC005005.2-201ENST00000420779 380 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXF1Q12946 EZH2P1-201ENST00000431167 291 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 UBE2D3P1-201ENST00000436669 444 ntBASIC1.93□□□□□ -2.1
FOXF1Q12946 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
FOXF1Q12946 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC1.93□□□□□ -2.1
FOXF1Q12946 AC004866.2-201ENST00000438285 481 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms