Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SNORA25.6-201ENST00000364121 118 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 RNU6-1005P-201ENST00000384519 107 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 RPL7P27-201ENST00000403775 720 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AL589994.1-201ENST00000404962 340 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 RNU6-920P-201ENST00000410926 92 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AL158825.1-201ENST00000414735 521 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 CDK8P2-201ENST00000415020 547 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AC234781.4-201ENST00000419384 244 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AC048351.1-201ENST00000420064 602 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.67□□□□□ -1.98
COL4A4P53420 MTND1P32-201ENST00000433043 938 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AL606490.7-201ENST00000433136 191 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 COX7BP2-201ENST00000437976 242 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 RPS12P2-201ENST00000439728 269 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 RBMX2P4-201ENST00000441256 376 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AC096638.1-201ENST00000444678 216 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AC245517.4-201ENST00000448601 281 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 SUMO1P1-201ENST00000497904 306 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC2.67□□□□□ -1.98
COL4A4P53420 CDC42P4-201ENST00000510507 563 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.67□□□□□ -1.98
COL4A4P53420 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC2.67□□□□□ -1.98
COL4A4P53420 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC2.67□□□□□ -1.98
COL4A4P53420 AC123904.3-201ENST00000547218 814 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC2.67□□□□□ -1.98
COL4A4P53420 ZNF519P3-201ENST00000557158 1032 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AP001269.3-201ENST00000588718 329 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AC010620.2-201ENST00000600135 313 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AP002906.1-201ENST00000603405 233 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 AC006270.3-201ENST00000605967 1036 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 PISRT1-201ENST00000626175 531 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC2.67□□□□□ -1.98
COL4A4P53420 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.67□□□□□ -1.98
COL4A4P53420 AC117529.2-201ENST00000512159 2068 ntBASIC2.67□□□□□ -1.98
COL4A4P53420 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL4A4P53420 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.67□□□□□ -1.98
COL4A4P53420 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL4A4P53420 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.66□□□□□ -1.98
COL4A4P53420 RNU6-797P-201ENST00000363101 109 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 U6.112-201ENST00000384129 70 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 Y_RNA.559-201ENST00000384686 107 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 RNU6-253P-201ENST00000384730 105 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
COL4A4P53420 RNU6-932P-201ENST00000391108 106 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AL021407.1-201ENST00000404531 386 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 RN7SKP123-201ENST00000410732 291 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AL663109.1-201ENST00000411498 844 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AIMP1P1-201ENST00000418670 937 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 MTND4P28-201ENST00000426217 387 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 DPRXP1-201ENST00000426312 460 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 MRPS10P2-201ENST00000431226 381 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 COX6CP2-201ENST00000444980 225 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 BZW1P2-201ENST00000473537 826 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 RN7SL499P-201ENST00000481141 276 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC2.66□□□□□ -1.98
COL4A4P53420 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.66□□□□□ -1.98
COL4A4P53420 RPL37P25-201ENST00000507308 276 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 RN7SKP24-201ENST00000515888 284 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 RN7SKP5-201ENST00000517045 272 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 RNU6-232P-201ENST00000517144 64 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC2.66□□□□□ -1.98
COL4A4P53420 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC2.66□□□□□ -1.98
COL4A4P53420 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.66□□□□□ -1.98
COL4A4P53420 AC009063.1-201ENST00000563342 702 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 MTCO3P13-201ENST00000577757 781 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.66□□□□□ -1.98
COL4A4P53420 VN1R82P-201ENST00000601481 356 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.66□□□□□ -1.98
COL4A4P53420 AC091946.2-201ENST00000606105 291 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC009237.15-201ENST00000610252 501 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.66□□□□□ -1.98
COL4A4P53420 Z99129.1-201ENST00000612510 255 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC095031.1-201ENST00000623685 672 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL4A4P53420 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
COL4A4P53420 MTND4P29-201ENST00000503122 1372 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 RNU6-560P-201ENST00000364007 108 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
COL4A4P53420 AL031577.2-201ENST00000404133 280 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.66□□□□□ -1.98
COL4A4P53420 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.66□□□□□ -1.98
COL4A4P53420 GTF2IP7-202ENST00000436677 309 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 USP9YP22-201ENST00000438971 294 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC2.66□□□□□ -1.98
COL4A4P53420 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC2.66□□□□□ -1.98
COL4A4P53420 AL627224.1-201ENST00000448334 444 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.66□□□□□ -1.98
COL4A4P53420 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC2.66□□□□□ -1.98
COL4A4P53420 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC2.66□□□□□ -1.98
COL4A4P53420 AL024509.2-201ENST00000493462 493 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC092436.1-201ENST00000506450 503 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.66□□□□□ -1.98
COL4A4P53420 OR5H4P-201ENST00000510851 923 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 MTCYBP19-201ENST00000517463 1124 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.66□□□□□ -1.98
COL4A4P53420 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.66□□□□□ -1.98
COL4A4P53420 RANP3-201ENST00000530970 276 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 OR4H12P-201ENST00000556269 907 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms