Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC093012.1-202ENST00000549403 582 ntBASIC3.59□□□□□ -1.83
SOX2P48431 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX2P48431 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX2P48431 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX2P48431 AC022655.2-201ENST00000577280 318 ntBASIC3.59□□□□□ -1.83
SOX2P48431 MIR4775-201ENST00000581168 75 ntBASIC3.59□□□□□ -1.83
SOX2P48431 AC091135.1-201ENST00000585943 307 ntBASIC3.59□□□□□ -1.83
SOX2P48431 UBE2V2P2-201ENST00000587677 504 ntBASIC3.59□□□□□ -1.83
SOX2P48431 AP001029.3-201ENST00000588063 596 ntBASIC3.59□□□□□ -1.83
SOX2P48431 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.59□□□□□ -1.83
SOX2P48431 AC069234.5-201ENST00000611056 416 ntBASIC3.59□□□□□ -1.83
SOX2P48431 AL161616.1-201ENST00000611867 286 ntBASIC3.59□□□□□ -1.83
SOX2P48431 Y_RNA.804-201ENST00000615262 101 ntBASIC3.59□□□□□ -1.83
SOX2P48431 AL353748.2-201ENST00000622148 471 ntBASIC3.59□□□□□ -1.83
SOX2P48431 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX2P48431 U6.114-201ENST00000636407 96 ntBASIC3.59□□□□□ -1.83
SOX2P48431 AC099654.5-201ENST00000636479 350 ntBASIC3.59□□□□□ -1.83
SOX2P48431 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.59□□□□□ -1.83
SOX2P48431 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.59□□□□□ -1.83
SOX2P48431 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.59□□□□□ -1.83
SOX2P48431 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX2P48431 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX2P48431 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SOX2P48431 RIOK3P1-201ENST00000418778 1528 ntBASIC3.59□□□□□ -1.84
SOX2P48431 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SOX2P48431 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SOX2P48431 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SOX2P48431 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX2P48431 NOL8P1-201ENST00000508336 3529 ntBASIC3.58□□□□□ -1.84
SOX2P48431 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX2P48431 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.58□□□□□ -1.84
SOX2P48431 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.58□□□□□ -1.84
SOX2P48431 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX2P48431 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX2P48431 Y_RNA.86-201ENST00000363020 111 ntBASIC3.58□□□□□ -1.84
SOX2P48431 Y_RNA.157-201ENST00000363638 102 ntBASIC3.58□□□□□ -1.84
SOX2P48431 RNU6-335P-201ENST00000364563 113 ntBASIC3.58□□□□□ -1.84
SOX2P48431 RNA5SP235-201ENST00000365411 114 ntBASIC3.58□□□□□ -1.84
SOX2P48431 MIR550A3-201ENST00000390735 95 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC110754.1-201ENST00000399740 601 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX2P48431 CYCSP43-201ENST00000438233 310 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AL356535.1-201ENST00000440335 398 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.58□□□□□ -1.84
SOX2P48431 MTND1P18-201ENST00000448191 573 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC073264.2-201ENST00000448886 166 ntBASIC3.58□□□□□ -1.84
SOX2P48431 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX2P48431 AP000852.1-201ENST00000472460 573 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX2P48431 RPL38P4-201ENST00000502376 214 ntBASIC3.58□□□□□ -1.84
SOX2P48431 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
SOX2P48431 AL592156.1-201ENST00000508758 304 ntBASIC3.58□□□□□ -1.84
SOX2P48431 RNA5SP49-201ENST00000516450 115 ntBASIC3.58□□□□□ -1.84
SOX2P48431 RNU7-143P-201ENST00000516781 65 ntBASIC3.58□□□□□ -1.84
SOX2P48431 RNA5SP503-201ENST00000517047 117 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC103843.2-201ENST00000530523 682 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX2P48431 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC3.58□□□□□ -1.84
SOX2P48431 TOMM20P2-201ENST00000540082 421 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.58□□□□□ -1.84
SOX2P48431 ADI1P3-201ENST00000549509 470 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.58□□□□□ -1.84
SOX2P48431 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.58□□□□□ -1.84
SOX2P48431 MIR4480-201ENST00000582492 71 ntBASIC3.58□□□□□ -1.84
SOX2P48431 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.58□□□□□ -1.84
SOX2P48431 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC3.58□□□□□ -1.84
SOX2P48431 AL591424.2-201ENST00000617023 128 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC015967.1-201ENST00000619893 476 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC104985.2-201ENST00000620598 500 ntBASIC3.58□□□□□ -1.84
SOX2P48431 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC079684.1-201ENST00000621405 437 ntBASIC3.58□□□□□ -1.84
SOX2P48431 AC004925.1-201ENST00000624256 2706 ntBASIC3.58□□□□□ -1.84
SOX2P48431 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.58□□□□□ -1.84
SOX2P48431 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
SOX2P48431 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX2P48431 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SOX2P48431 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SOX2P48431 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SOX2P48431 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SOX2P48431 Y_RNA.72-201ENST00000362894 103 ntBASIC3.57□□□□□ -1.84
SOX2P48431 RNU6-797P-201ENST00000363101 109 ntBASIC3.57□□□□□ -1.84
SOX2P48431 Y_RNA.279-201ENST00000364763 95 ntBASIC3.57□□□□□ -1.84
SOX2P48431 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.57□□□□□ -1.84
SOX2P48431 RNU6-629P-201ENST00000384061 103 ntBASIC3.57□□□□□ -1.84
SOX2P48431 RNU6-1009P-201ENST00000390996 107 ntBASIC3.57□□□□□ -1.84
SOX2P48431 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX2P48431 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.57□□□□□ -1.84
SOX2P48431 USP9YP7-201ENST00000436723 430 ntBASIC3.57□□□□□ -1.84
SOX2P48431 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX2P48431 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.57□□□□□ -1.84
SOX2P48431 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.57□□□□□ -1.84
SOX2P48431 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX2P48431 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.57□□□□□ -1.84
SOX2P48431 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.57□□□□□ -1.84
SOX2P48431 AL359073.1-201ENST00000448036 403 ntBASIC3.57□□□□□ -1.84
SOX2P48431 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.57□□□□□ -1.84
SOX2P48431 USP9YP32-201ENST00000452432 430 ntBASIC3.57□□□□□ -1.84
SOX2P48431 TAB3P1-202ENST00000452645 1634 ntBASIC3.57□□□□□ -1.84
SOX2P48431 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.57□□□□□ -1.84
SOX2P48431 PMCHL2-203ENST00000457791 237 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms