Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC004223.2-201ENST00000590309 544 ntBASIC3.09□□□□□ -1.91
SOX3P41225 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.09□□□□□ -1.91
SOX3P41225 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.09□□□□□ -1.91
SOX3P41225 AC007687.1-201ENST00000602704 304 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AL162713.1-201ENST00000604480 262 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AC064807.4-201ENST00000607201 407 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AL590282.1-201ENST00000610379 1136 ntBASIC3.09□□□□□ -1.91
SOX3P41225 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.09□□□□□ -1.91
SOX3P41225 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AC012150.2-201ENST00000621300 544 ntBASIC3.09□□□□□ -1.91
SOX3P41225 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.09□□□□□ -1.91
SOX3P41225 AF127577.6-201ENST00000623352 2191 ntBASIC3.09□□□□□ -1.91
SOX3P41225 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
SOX3P41225 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
SOX3P41225 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SOX3P41225 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SOX3P41225 RPL7P26-201ENST00000333817 754 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
SOX3P41225 MIR148B-201ENST00000362252 99 ntBASIC3.08□□□□□ -1.92
SOX3P41225 Y_RNA.51-201ENST00000362725 102 ntBASIC3.08□□□□□ -1.92
SOX3P41225 RNA5SP383-201ENST00000362934 120 ntBASIC3.08□□□□□ -1.92
SOX3P41225 RNU6-1074P-201ENST00000383995 104 ntBASIC3.08□□□□□ -1.92
SOX3P41225 MIR607-201ENST00000385241 96 ntBASIC3.08□□□□□ -1.92
SOX3P41225 Y_RNA.608-201ENST00000410647 95 ntBASIC3.08□□□□□ -1.92
SOX3P41225 RN7SKP142-201ENST00000411236 328 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AC078974.1-201ENST00000411597 223 ntBASIC3.08□□□□□ -1.92
SOX3P41225 MTND1P21-201ENST00000412991 285 ntBASIC3.08□□□□□ -1.92
SOX3P41225 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SOX3P41225 AL356583.2-201ENST00000426536 280 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AC010153.1-201ENST00000432862 727 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.08□□□□□ -1.92
SOX3P41225 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.08□□□□□ -1.92
SOX3P41225 AL592447.1-201ENST00000447592 540 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AC008264.1-201ENST00000447612 367 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AL590365.1-201ENST00000450788 243 ntBASIC3.08□□□□□ -1.92
SOX3P41225 MTCO2P18-201ENST00000457151 658 ntBASIC3.08□□□□□ -1.92
SOX3P41225 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.08□□□□□ -1.92
SOX3P41225 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX3P41225 MTCO3P28-201ENST00000513351 515 ntBASIC3.08□□□□□ -1.92
SOX3P41225 RNU6-201P-201ENST00000517100 61 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX3P41225 AP002748.2-201ENST00000528671 348 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AC022878.1-201ENST00000530684 149 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX3P41225 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.08□□□□□ -1.92
SOX3P41225 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.08□□□□□ -1.92
SOX3P41225 SNORD84-203ENST00000584275 78 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.08□□□□□ -1.92
SOX3P41225 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX3P41225 AC119751.7-201ENST00000600494 245 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AL161756.2-201ENST00000604597 246 ntBASIC3.08□□□□□ -1.92
SOX3P41225 RN7SKP299-201ENST00000606679 301 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AL158211.4-201ENST00000606988 584 ntBASIC3.08□□□□□ -1.92
SOX3P41225 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX3P41225 AC138749.5-201ENST00000611461 208 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AC116165.2-201ENST00000616705 206 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX3P41225 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.08□□□□□ -1.92
SOX3P41225 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.08□□□□□ -1.92
SOX3P41225 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SOX3P41225 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
SOX3P41225 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
SOX3P41225 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SOX3P41225 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
SOX3P41225 AL353746.1-201ENST00000566293 6881 ntBASIC3.08□□□□□ -1.92
SOX3P41225 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
SOX3P41225 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.07□□□□□ -1.92
SOX3P41225 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.07□□□□□ -1.92
SOX3P41225 AC073346.2-201ENST00000624724 2058 ntBASIC3.07□□□□□ -1.92
SOX3P41225 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
SOX3P41225 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
SOX3P41225 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
SOX3P41225 FGF7P2-201ENST00000332473 296 ntBASIC3.07□□□□□ -1.92
SOX3P41225 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
SOX3P41225 Y_RNA.201-201ENST00000364052 96 ntBASIC3.07□□□□□ -1.92
SOX3P41225 RNU6-1078P-201ENST00000364522 103 ntBASIC3.07□□□□□ -1.92
SOX3P41225 RPL7P25-201ENST00000404151 721 ntBASIC3.07□□□□□ -1.92
SOX3P41225 HMGN1P24-201ENST00000412282 298 ntBASIC3.07□□□□□ -1.92
SOX3P41225 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.07□□□□□ -1.92
SOX3P41225 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.07□□□□□ -1.92
SOX3P41225 CCDC58P2-201ENST00000417131 366 ntBASIC3.07□□□□□ -1.92
SOX3P41225 DUTP6-201ENST00000425573 462 ntBASIC3.07□□□□□ -1.92
SOX3P41225 MTCO1P39-201ENST00000426148 480 ntBASIC3.07□□□□□ -1.92
SOX3P41225 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.07□□□□□ -1.92
SOX3P41225 AP000936.2-201ENST00000447151 681 ntBASIC3.07□□□□□ -1.92
SOX3P41225 USP9YP12-201ENST00000450481 570 ntBASIC3.07□□□□□ -1.92
SOX3P41225 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.07□□□□□ -1.92
SOX3P41225 SNRPFP4-201ENST00000456366 242 ntBASIC3.07□□□□□ -1.92
SOX3P41225 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.07□□□□□ -1.92
SOX3P41225 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.07□□□□□ -1.92
SOX3P41225 AC093331.1-201ENST00000521474 169 ntBASIC3.07□□□□□ -1.92
SOX3P41225 OR5D17P-201ENST00000531492 978 ntBASIC3.07□□□□□ -1.92
SOX3P41225 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.07□□□□□ -1.92
SOX3P41225 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.07□□□□□ -1.92
SOX3P41225 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.07□□□□□ -1.92
SOX3P41225 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.07□□□□□ -1.92
SOX3P41225 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.07□□□□□ -1.92
SOX3P41225 AC087752.4-201ENST00000605911 462 ntBASIC3.07□□□□□ -1.92
SOX3P41225 OR10AB1P-201ENST00000609613 938 ntBASIC3.07□□□□□ -1.92
SOX3P41225 MIR6130-201ENST00000619419 109 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms