Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX2P35548 RPL36AP41-201ENST00000493820 306 ntBASIC4.24□□□□□ -1.73
MSX2P35548 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.24□□□□□ -1.73
MSX2P35548 COX7A2P2-201ENST00000505291 250 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AC006499.6-201ENST00000511169 607 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.24□□□□□ -1.73
MSX2P35548 RN7SKP66-201ENST00000516681 231 ntBASIC4.24□□□□□ -1.73
MSX2P35548 RNU6-798P-201ENST00000516912 103 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX2P35548 IGLVIV-53-201ENST00000520107 367 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX2P35548 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX2P35548 MTND4P7-201ENST00000523876 130 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AC018630.1-201ENST00000541376 925 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX2P35548 AC063950.1-201ENST00000552036 308 ntBASIC4.24□□□□□ -1.73
MSX2P35548 SNRPGP18-201ENST00000553000 214 ntBASIC4.24□□□□□ -1.73
MSX2P35548 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX2P35548 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
MSX2P35548 AC006116.3-201ENST00000592968 361 ntBASIC4.24□□□□□ -1.73
MSX2P35548 CYP2C61P-201ENST00000604072 290 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AL391358.1-201ENST00000605342 190 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.24□□□□□ -1.73
MSX2P35548 EIF3FP1-201ENST00000613970 806 ntBASIC4.24□□□□□ -1.73
MSX2P35548 uc_338.11-201ENST00000619132 160 ntBASIC4.24□□□□□ -1.73
MSX2P35548 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.24□□□□□ -1.73
MSX2P35548 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.24□□□□□ -1.73
MSX2P35548 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.24□□□□□ -1.73
MSX2P35548 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
MSX2P35548 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.24□□□□□ -1.73
MSX2P35548 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.24□□□□□ -1.73
MSX2P35548 AC007390.2-201ENST00000606229 3803 ntBASIC4.24□□□□□ -1.73
MSX2P35548 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
MSX2P35548 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.24□□□□□ -1.73
MSX2P35548 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSX2P35548 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
MSX2P35548 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
MSX2P35548 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
MSX2P35548 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSX2P35548 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.23□□□□□ -1.73
MSX2P35548 Y_RNA.28-201ENST00000362554 111 ntBASIC4.23□□□□□ -1.73
MSX2P35548 RNU6-179P-201ENST00000363350 107 ntBASIC4.23□□□□□ -1.73
MSX2P35548 RN7SKP103-201ENST00000363848 320 ntBASIC4.23□□□□□ -1.73
MSX2P35548 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSX2P35548 MIR765-201ENST00000390226 114 ntBASIC4.23□□□□□ -1.73
MSX2P35548 MIR550A3-201ENST00000390735 95 ntBASIC4.23□□□□□ -1.73
MSX2P35548 RNU6-278P-201ENST00000390945 109 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AL645733.1-201ENST00000402250 217 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AL136372.1-201ENST00000403060 228 ntBASIC4.23□□□□□ -1.73
MSX2P35548 RPS4XP9-201ENST00000405151 780 ntBASIC4.23□□□□□ -1.73
MSX2P35548 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AC074085.1-201ENST00000413598 418 ntBASIC4.23□□□□□ -1.73
MSX2P35548 RPS23P10-201ENST00000416185 486 ntBASIC4.23□□□□□ -1.73
MSX2P35548 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC4.23□□□□□ -1.73
MSX2P35548 AL353748.1-201ENST00000440753 474 ntBASIC4.23□□□□□ -1.73
MSX2P35548 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.23□□□□□ -1.73
MSX2P35548 AL590399.6-201ENST00000446396 307 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.23□□□□□ -1.73
MSX2P35548 HMGB3P22-202ENST00000451823 572 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.23□□□□□ -1.73
MSX2P35548 SCARNA22-201ENST00000503991 125 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AC017037.2-201ENST00000513850 890 ntBASIC4.23□□□□□ -1.73
MSX2P35548 RNU6-566P-201ENST00000516790 107 ntBASIC4.23□□□□□ -1.73
MSX2P35548 RNU6-273P-201ENST00000516937 96 ntBASIC4.23□□□□□ -1.73
MSX2P35548 RNU4-60P-201ENST00000517239 135 ntBASIC4.23□□□□□ -1.73
MSX2P35548 IGKV2D-36-201ENST00000518643 226 ntBASIC4.23□□□□□ -1.73
MSX2P35548 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.23□□□□□ -1.73
MSX2P35548 AL133271.1-201ENST00000538229 291 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.23□□□□□ -1.73
MSX2P35548 AC100830.2-201ENST00000581636 240 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.23□□□□□ -1.73
MSX2P35548 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.23□□□□□ -1.73
MSX2P35548 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.23□□□□□ -1.73
MSX2P35548 BPIFA4P-203ENST00000603168 689 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AC012603.1-201ENST00000606424 528 ntBASIC4.23□□□□□ -1.73
MSX2P35548 Z82243.1-201ENST00000609432 473 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AC068870.2-201ENST00000620635 389 ntBASIC4.23□□□□□ -1.73
MSX2P35548 A2MP1-204ENST00000566278 4130 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AL356489.2-201ENST00000566968 3528 ntBASIC4.23□□□□□ -1.73
MSX2P35548 AC025031.4-201ENST00000621248 3271 ntBASIC4.23□□□□□ -1.73
MSX2P35548 MAPK10-286ENST00000641208 8747 ntBASIC4.23□□□□□ -1.73
MSX2P35548 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSX2P35548 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
MSX2P35548 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.22□□□□□ -1.73
MSX2P35548 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSX2P35548 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSX2P35548 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSX2P35548 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.22□□□□□ -1.73
MSX2P35548 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSX2P35548 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.22□□□□□ -1.73
MSX2P35548 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSX2P35548 RNA5SP307-201ENST00000362863 116 ntBASIC4.22□□□□□ -1.73
MSX2P35548 U8.4-201ENST00000363626 134 ntBASIC4.22□□□□□ -1.73
MSX2P35548 SNORD115-7-201ENST00000365306 82 ntBASIC4.22□□□□□ -1.73
MSX2P35548 RNU5E-6P-201ENST00000365574 115 ntBASIC4.22□□□□□ -1.73
MSX2P35548 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSX2P35548 MIR124-3-201ENST00000384866 87 ntBASIC4.22□□□□□ -1.73
MSX2P35548 AL133270.1-201ENST00000402635 279 ntBASIC4.22□□□□□ -1.73
MSX2P35548 LAP3P1-201ENST00000403648 294 ntBASIC4.22□□□□□ -1.73
MSX2P35548 RPL37P10-201ENST00000412884 288 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms