Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC9P31274 MIR3945-201ENST00000581853 98 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 U73023.1-201ENST00000603134 700 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 AL355812.1-201ENST00000603215 216 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 AL031775.1-201ENST00000607014 887 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
HOXC9P31274 AL357080.1-201ENST00000617394 239 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 AC018755.4-201ENST00000619715 454 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.78□□□□□ -1.8
HOXC9P31274 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
HOXC9P31274 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC9P31274 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC9P31274 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC9P31274 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.78□□□□□ -1.81
HOXC9P31274 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC9P31274 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC9P31274 AL672167.1-206ENST00000356293 943 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
HOXC9P31274 RNU6-501P-201ENST00000364072 100 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 RNU6-744P-201ENST00000365557 107 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 RNU6-1316P-201ENST00000384242 108 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
HOXC9P31274 AL138827.1-201ENST00000402666 306 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXC9P31274 MRPL50P2-201ENST00000416821 482 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 AC245291.1-201ENST00000419501 328 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXC9P31274 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXC9P31274 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXC9P31274 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXC9P31274 EPS15P1-201ENST00000448836 336 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXC9P31274 AL121877.1-201ENST00000453704 622 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 RPS20P32-201ENST00000456044 356 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXC9P31274 AC106872.3-201ENST00000495104 446 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC9P31274 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXC9P31274 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXC9P31274 POU5F1P7-201ENST00000508759 541 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 VWA8P1-201ENST00000510889 176 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 MTCO3P28-201ENST00000513351 515 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 IGKV2D-23-201ENST00000518179 286 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 AC060788.1-201ENST00000521318 469 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 AP004247.1-201ENST00000531556 1289 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.77□□□□□ -1.81
HOXC9P31274 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXC9P31274 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXC9P31274 PCMTD1P2-201ENST00000565017 355 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 AP005136.1-201ENST00000579765 429 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXC9P31274 AC092354.1-201ENST00000606057 376 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 AC116312.1-201ENST00000606841 314 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 AC013412.1-201ENST00000610687 192 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 Z69908.1-201ENST00000622603 247 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXC9P31274 IGHVIII-44-202ENST00000636235 289 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 AC138649.5-201ENST00000637456 137 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC9P31274 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.77□□□□□ -1.81
HOXC9P31274 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC9P31274 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXC9P31274 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXC9P31274 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXC9P31274 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXC9P31274 SNORD116-9-201ENST00000384000 95 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 SNORD116-3-201ENST00000384287 95 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 SNORD116-7-201ENST00000384404 95 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 SNORD116-5-201ENST00000384462 95 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 MIR9-1-201ENST00000385198 89 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 MTCYBP36-201ENST00000404146 440 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXC9P31274 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXC9P31274 Z99497.1-201ENST00000421282 135 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 AL365184.2-201ENST00000431139 435 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 AL512286.1-201ENST00000439244 400 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXC9P31274 RPL31P3-201ENST00000458430 332 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 AC109486.1-201ENST00000486833 374 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXC9P31274 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXC9P31274 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXC9P31274 EEF1B2P4-201ENST00000551398 348 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.76□□□□□ -1.81
HOXC9P31274 ACTR3BP3-201ENST00000565577 979 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 MIR544B-201ENST00000582372 78 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 AL022161.1-201ENST00000604390 213 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HOXC9P31274 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXC9P31274 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXC9P31274 AL049780.3-201ENST00000624612 1583 ntBASIC3.76□□□□□ -1.81
HOXC9P31274 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC9P31274 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
HOXC9P31274 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC9P31274 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC9P31274 RNA5SP383-201ENST00000362934 120 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 SNORA46-201ENST00000384762 135 ntBASIC3.75□□□□□ -1.81
HOXC9P31274 U8.14-201ENST00000390843 143 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms