Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC1.49□□□□□ -2.17
COL6A3P12111 AC010735.1-201ENST00000567305 1026 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 OOSP1P2-201ENST00000579644 351 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 MIR3660-201ENST00000584845 100 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 KATNBL1P1-201ENST00000605192 748 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 AP000676.4-201ENST00000624659 623 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC1.49□□□□□ -2.17
COL6A3P12111 AC135776.4-201ENST00000624300 1904 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.49□□□□□ -2.17
COL6A3P12111 RPS12P24-201ENST00000412619 387 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 RPL35AP22-201ENST00000436855 335 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 AL357520.1-201ENST00000441557 453 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.49□□□□□ -2.17
COL6A3P12111 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.49□□□□□ -2.17
COL6A3P12111 AC004223.1-201ENST00000479840 271 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC1.49□□□□□ -2.17
COL6A3P12111 AC090071.1-201ENST00000507713 644 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 FABP5P6-201ENST00000510588 409 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
COL6A3P12111 Y_RNA.457-201ENST00000384237 111 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 AL445669.1-201ENST00000426743 755 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
COL6A3P12111 C1GALT1P2-201ENST00000510813 1104 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.48□□□□□ -2.17
COL6A3P12111 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.48□□□□□ -2.17
COL6A3P12111 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
COL6A3P12111 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
COL6A3P12111 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.48□□□□□ -2.17
COL6A3P12111 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
COL6A3P12111 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.48□□□□□ -2.17
COL6A3P12111 AC018630.2-201ENST00000534866 2403 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 RNU1-78P-201ENST00000391248 165 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 RNA5SP239-201ENST00000410218 129 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 AC092638.1-201ENST00000411966 1275 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.48□□□□□ -2.17
COL6A3P12111 AL353718.1-201ENST00000451028 517 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 RPS29P20-201ENST00000489592 171 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.48□□□□□ -2.17
COL6A3P12111 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC1.48□□□□□ -2.17
COL6A3P12111 AL109653.1-201ENST00000603091 248 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 AC013553.2-201ENST00000604244 589 ntBASIC1.48□□□□□ -2.17
COL6A3P12111 UGP2-231ENST00000627474 264 ntTSL 5 BASIC1.48□□□□□ -2.17
COL6A3P12111 NEK4P1-201ENST00000433383 879 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 AC108059.3-201ENST00000456388 214 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC1.47□□□□□ -2.17
COL6A3P12111 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.47□□□□□ -2.17
COL6A3P12111 NPM1P52-201ENST00000518264 846 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 RNA5SP127-201ENST00000411051 133 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.47□□□□□ -2.17
COL6A3P12111 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC1.47□□□□□ -2.17
COL6A3P12111 SMILR-201ENST00000533992 553 ntTSL 4 BASIC1.47□□□□□ -2.17
COL6A3P12111 EEF1B2P4-201ENST00000551398 348 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC1.47□□□□□ -2.17
COL6A3P12111 AC012531.5-201ENST00000611375 151 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 MIR2909-201ENST00000617113 69 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.47□□□□□ -2.17
COL6A3P12111 SNORA9.1-201ENST00000362412 131 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC1.47□□□□□ -2.17
COL6A3P12111 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC1.47□□□□□ -2.17
COL6A3P12111 AC004854.1-201ENST00000440356 349 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 AC004865.1-201ENST00000442276 1003 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.47□□□□□ -2.17
COL6A3P12111 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC1.47□□□□□ -2.17
COL6A3P12111 AL020996.3-201ENST00000606617 222 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 AC006329.2-201ENST00000611491 394 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.47□□□□□ -2.17
COL6A3P12111 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
COL6A3P12111 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.46□□□□□ -2.18
COL6A3P12111 AC241377.1-201ENST00000619797 406 ntBASIC1.46□□□□□ -2.18
COL6A3P12111 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.46□□□□□ -2.18
COL6A3P12111 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
COL6A3P12111 MTND5P9-201ENST00000503854 1755 ntBASIC1.46□□□□□ -2.18
COL6A3P12111 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.46□□□□□ -2.18
COL6A3P12111 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.46□□□□□ -2.18
COL6A3P12111 HSPE1P11-201ENST00000339579 310 ntBASIC1.46□□□□□ -2.18
COL6A3P12111 Y_RNA.142-201ENST00000363491 102 ntBASIC1.46□□□□□ -2.18
COL6A3P12111 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC1.46□□□□□ -2.18
COL6A3P12111 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.46□□□□□ -2.18
COL6A3P12111 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.46□□□□□ -2.18
COL6A3P12111 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
COL6A3P12111 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.46□□□□□ -2.18
COL6A3P12111 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
COL6A3P12111 MTCO1P6-201ENST00000481192 1384 ntBASIC1.46□□□□□ -2.18
COL6A3P12111 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
COL6A3P12111 RNU6-30P-201ENST00000384561 107 ntBASIC1.45□□□□□ -2.18
COL6A3P12111 MIR1468-201ENST00000410600 86 ntBASIC1.45□□□□□ -2.18
COL6A3P12111 Z99497.1-201ENST00000421282 135 ntBASIC1.45□□□□□ -2.18
COL6A3P12111 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC1.45□□□□□ -2.18
COL6A3P12111 SEPT7P9-203ENST00000604116 343 ntBASIC1.45□□□□□ -2.18
COL6A3P12111 AC009812.4-201ENST00000569134 1805 ntBASIC1.45□□□□□ -2.18
COL6A3P12111 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
COL6A3P12111 Y_RNA.559-201ENST00000384686 107 ntBASIC1.45□□□□□ -2.18
COL6A3P12111 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC1.45□□□□□ -2.18
COL6A3P12111 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.45□□□□□ -2.18
COL6A3P12111 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.45□□□□□ -2.18
COL6A3P12111 SNORA62.2-201ENST00000364672 152 ntBASIC1.45□□□□□ -2.18
COL6A3P12111 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
COL6A3P12111 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.45□□□□□ -2.18
COL6A3P12111 AC119618.1-201ENST00000434191 222 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms