Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.52□□□□□ -1.69
HMGB1P09429 RPL36AP53-201ENST00000432891 316 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 MTND1P30-201ENST00000441241 901 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.52□□□□□ -1.69
HMGB1P09429 SUN3-208ENST00000453192 801 ntTSL 5 BASIC4.52□□□□□ -1.69
HMGB1P09429 KATNBL1P6-201ENST00000453433 915 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 ART2BP-201ENST00000453501 499 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.52□□□□□ -1.69
HMGB1P09429 AC006499.5-201ENST00000505037 514 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.52□□□□□ -1.69
HMGB1P09429 MRPS36P2-201ENST00000512569 299 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 RN7SKP209-201ENST00000516888 304 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 RNU6-56P-201ENST00000516986 93 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.52□□□□□ -1.69
HMGB1P09429 AP006587.4-201ENST00000526053 529 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.52□□□□□ -1.69
HMGB1P09429 ARL2BPP2-201ENST00000550907 489 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.52□□□□□ -1.69
HMGB1P09429 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC4.52□□□□□ -1.69
HMGB1P09429 AC010546.1-201ENST00000569391 485 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.52□□□□□ -1.69
HMGB1P09429 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.52□□□□□ -1.69
HMGB1P09429 AC007619.2-201ENST00000605743 379 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.52□□□□□ -1.69
HMGB1P09429 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
HMGB1P09429 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HMGB1P09429 SRP72P2-201ENST00000344851 1979 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.51□□□□□ -1.69
HMGB1P09429 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HMGB1P09429 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HMGB1P09429 RNA5SP322-201ENST00000363617 119 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 RNU6-553P-201ENST00000364047 96 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 SNORA3.3-201ENST00000408712 125 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 RNU2-36P-201ENST00000410361 191 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 RNU2-49P-201ENST00000410666 184 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.51□□□□□ -1.69
HMGB1P09429 AC019097.1-201ENST00000424783 735 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 AL353705.1-201ENST00000433468 480 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.51□□□□□ -1.69
HMGB1P09429 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HMGB1P09429 Z96811.1-201ENST00000445880 108 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 ST13P20-201ENST00000447996 1065 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 AC006480.1-201ENST00000449887 378 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 RPL27AP5-201ENST00000469428 449 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 TRBV12-2-201ENST00000489763 344 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 AC010460.1-201ENST00000507087 466 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.51□□□□□ -1.69
HMGB1P09429 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
HMGB1P09429 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.51□□□□□ -1.69
HMGB1P09429 VBP1-203ENST00000535916 944 ntTSL 2 BASIC4.51□□□□□ -1.69
HMGB1P09429 CYCSP30-201ENST00000546447 172 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.51□□□□□ -1.69
HMGB1P09429 AKIRIN1P1-201ENST00000547384 544 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 AC025281.1-201ENST00000567026 265 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC4.51□□□□□ -1.69
HMGB1P09429 MIR3118-1-201ENST00000581787 76 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC4.51□□□□□ -1.69
HMGB1P09429 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.51□□□□□ -1.69
HMGB1P09429 WISP1-OT1-201ENST00000602893 642 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 AL359999.1-201ENST00000604513 294 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HMGB1P09429 ZYXP1-201ENST00000617638 118 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 FRG1KP-201ENST00000623592 341 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 AC091905.1-201ENST00000624400 311 ntBASIC4.51□□□□□ -1.69
HMGB1P09429 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC4.51□□□□□ -1.69
HMGB1P09429 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HMGB1P09429 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
HMGB1P09429 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC4.5□□□□□ -1.69
HMGB1P09429 FRG1CP-201ENST00000358464 769 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 RNU6-288P-201ENST00000363690 104 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 RAB28P1-201ENST00000411517 641 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 RPS15AP5-201ENST00000436276 388 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC4.5□□□□□ -1.69
HMGB1P09429 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.5□□□□□ -1.69
HMGB1P09429 SNORD97-201ENST00000459187 142 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.5□□□□□ -1.69
HMGB1P09429 RN7SL93P-201ENST00000463035 293 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 RPL31P41-201ENST00000477967 372 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.5□□□□□ -1.69
HMGB1P09429 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.5□□□□□ -1.69
HMGB1P09429 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.5□□□□□ -1.69
HMGB1P09429 AC022634.1-201ENST00000520765 532 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC4.5□□□□□ -1.69
HMGB1P09429 AC007224.1-201ENST00000564410 144 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AL670379.6-201ENST00000603753 252 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AL670379.11-201ENST00000604059 253 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AC008162.1-201ENST00000604718 254 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AL670379.1-201ENST00000604752 252 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AL670379.5-201ENST00000605253 252 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AL670379.12-201ENST00000605291 253 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AL670379.8-201ENST00000605353 252 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AL670379.7-201ENST00000605823 252 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AC107294.1-201ENST00000609524 467 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AC104010.1-201ENST00000616889 150 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 AC099506.2-201ENST00000623074 221 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC4.5□□□□□ -1.69
HMGB1P09429 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.5□□□□□ -1.69
HMGB1P09429 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HMGB1P09429 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HMGB1P09429 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms