Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.4□□□□□ -2.19
HMGN4O00479 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC1.4□□□□□ -2.19
HMGN4O00479 AL138976.2-201ENST00000563989 694 ntBASIC1.4□□□□□ -2.19
HMGN4O00479 AC087481.2-201ENST00000565492 330 ntBASIC1.4□□□□□ -2.19
HMGN4O00479 AL360181.4-201ENST00000621752 134 ntBASIC1.4□□□□□ -2.19
HMGN4O00479 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1.4□□□□□ -2.19
HMGN4O00479 AC130650.2-201ENST00000618736 2403 ntBASIC1.4□□□□□ -2.19
HMGN4O00479 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.4□□□□□ -2.19
HMGN4O00479 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.4□□□□□ -2.19
HMGN4O00479 MTND4P31-201ENST00000425607 1343 ntBASIC1.4□□□□□ -2.19
HMGN4O00479 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.39□□□□□ -2.19
HMGN4O00479 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
HMGN4O00479 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
HMGN4O00479 MIR517C-201ENST00000385103 95 ntBASIC1.39□□□□□ -2.19
HMGN4O00479 RNU6-193P-201ENST00000410977 107 ntBASIC1.39□□□□□ -2.19
HMGN4O00479 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.39□□□□□ -2.19
HMGN4O00479 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.39□□□□□ -2.19
HMGN4O00479 MTCYBP12-201ENST00000440559 1134 ntBASIC1.39□□□□□ -2.19
HMGN4O00479 AC009296.1-201ENST00000443146 155 ntBASIC1.39□□□□□ -2.19
HMGN4O00479 HMGB1P48-201ENST00000446155 598 ntBASIC1.39□□□□□ -2.19
HMGN4O00479 AC010099.1-201ENST00000455434 375 ntBASIC1.39□□□□□ -2.19
HMGN4O00479 CDC42P1-201ENST00000456658 548 ntBASIC1.39□□□□□ -2.19
HMGN4O00479 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1.39□□□□□ -2.19
HMGN4O00479 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC1.39□□□□□ -2.19
HMGN4O00479 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.39□□□□□ -2.19
HMGN4O00479 SETP7-201ENST00000552169 453 ntBASIC1.39□□□□□ -2.19
HMGN4O00479 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC1.39□□□□□ -2.19
HMGN4O00479 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.39□□□□□ -2.19
HMGN4O00479 AP005205.1-201ENST00000563503 508 ntBASIC1.39□□□□□ -2.19
HMGN4O00479 MIR3117-201ENST00000584034 78 ntBASIC1.39□□□□□ -2.19
HMGN4O00479 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.39□□□□□ -2.19
HMGN4O00479 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC1.39□□□□□ -2.19
HMGN4O00479 AC091953.2-201ENST00000623979 160 ntBASIC1.39□□□□□ -2.19
HMGN4O00479 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
HMGN4O00479 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.38□□□□□ -2.19
HMGN4O00479 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
HMGN4O00479 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.38□□□□□ -2.19
HMGN4O00479 AP000648.3-201ENST00000623539 4507 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 RNA5SP190-201ENST00000365222 118 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 ZNF90P2-204ENST00000419323 1075 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC1.38□□□□□ -2.19
HMGN4O00479 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC1.38□□□□□ -2.19
HMGN4O00479 GPM6BP3-201ENST00000442797 145 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 WASF1P1-201ENST00000447560 1131 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.38□□□□□ -2.19
HMGN4O00479 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.38□□□□□ -2.19
HMGN4O00479 RPL31P41-201ENST00000477967 372 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 MTCYBP17-201ENST00000503579 789 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.38□□□□□ -2.19
HMGN4O00479 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC1.38□□□□□ -2.19
HMGN4O00479 Y_RNA.675-201ENST00000516389 149 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.38□□□□□ -2.19
HMGN4O00479 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC1.38□□□□□ -2.19
HMGN4O00479 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC1.38□□□□□ -2.19
HMGN4O00479 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.38□□□□□ -2.19
HMGN4O00479 AGGF1P5-201ENST00000567900 919 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.38□□□□□ -2.19
HMGN4O00479 MTCO1P40-201ENST00000574371 625 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 AC090666.1-201ENST00000578241 445 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 OR4G1P-201ENST00000588632 938 ntBASIC1.38□□□□□ -2.19
HMGN4O00479 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC1.38□□□□□ -2.19
HMGN4O00479 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC1.38□□□□□ -2.19
HMGN4O00479 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
HMGN4O00479 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
HMGN4O00479 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
HMGN4O00479 NUP58P1-201ENST00000502546 1738 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
HMGN4O00479 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
HMGN4O00479 NSRP1P1-201ENST00000444067 1693 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 FAM133CP-201ENST00000332869 704 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 SNORA46.1-201ENST00000391069 153 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.37□□□□□ -2.19
HMGN4O00479 RPL7P27-201ENST00000403775 720 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 ARL2BPP3-201ENST00000421226 480 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 AL590762.3-201ENST00000436372 640 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 BNIP3P2-201ENST00000441221 577 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 OR6C72P-201ENST00000451403 892 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 ATG12P2-201ENST00000456830 416 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 NAP1L1P3-201ENST00000462291 880 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 AC008481.1-201ENST00000463278 396 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 AC097493.1-201ENST00000463958 372 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 EIF4EP3-201ENST00000498782 656 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 IGKV2D-36-201ENST00000518643 226 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 AP001804.3-201ENST00000525146 880 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
HMGN4O00479 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC1.37□□□□□ -2.19
HMGN4O00479 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.37□□□□□ -2.19
HMGN4O00479 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.37□□□□□ -2.19
HMGN4O00479 XIAPP1-201ENST00000603162 600 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 AL035411.2-201ENST00000604022 421 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 AL162373.1-201ENST00000620433 407 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 MTND5P10-201ENST00000603719 1809 ntBASIC1.37□□□□□ -2.19
HMGN4O00479 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
HMGN4O00479 AL137003.2-201ENST00000606924 2538 ntBASIC1.36□□□□□ -2.19
HMGN4O00479 AC002543.1-201ENST00000299783 1954 ntBASIC1.36□□□□□ -2.19
HMGN4O00479 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.36□□□□□ -2.19
HMGN4O00479 RNU6-263P-201ENST00000363811 107 ntBASIC1.36□□□□□ -2.19
HMGN4O00479 SNORA3A-201ENST00000364113 130 ntBASIC1.36□□□□□ -2.19
HMGN4O00479 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
HMGN4O00479 SNORD23.1-201ENST00000408212 104 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms