Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
FOXN3O00409 HMGB1P12-201ENST00000438594 598 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXN3O00409 MTCO3P45-201ENST00000443036 613 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 AC006480.1-201ENST00000449887 378 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXN3O00409 MTND2P24-201ENST00000453434 806 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 AL359385.1-201ENST00000456509 365 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 RPL21P104-201ENST00000464143 478 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 AL672167.3-201ENST00000465951 960 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 MTAPP1-201ENST00000489154 819 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 RPL9P6-201ENST00000492764 598 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 AC091133.4-201ENST00000511142 308 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 RAC1P2-201ENST00000511164 579 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 RNA5SP143-201ENST00000516936 115 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 SNORA31.22-201ENST00000517204 135 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 SUMO2P20-201ENST00000520803 283 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 AC011979.2-201ENST00000527568 352 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXN3O00409 ARL2BPP2-201ENST00000550907 489 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.11□□□□□ -1.75
FOXN3O00409 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC4.11□□□□□ -1.75
FOXN3O00409 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXN3O00409 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXN3O00409 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.11□□□□□ -1.75
FOXN3O00409 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXN3O00409 AF250324.2-201ENST00000608299 610 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 AC006023.2-201ENST00000609916 167 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXN3O00409 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXN3O00409 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXN3O00409 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXN3O00409 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXN3O00409 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXN3O00409 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXN3O00409 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXN3O00409 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
FOXN3O00409 RNA5SP322-201ENST00000363617 119 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 RNU6-867P-201ENST00000364956 107 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 U1.1-201ENST00000384101 164 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 RNU6-456P-201ENST00000384493 107 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXN3O00409 RNA5SP129-201ENST00000410276 118 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 RNU2-36P-201ENST00000410361 191 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 EIF1P1-201ENST00000421436 341 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.1□□□□□ -1.75
FOXN3O00409 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.1□□□□□ -1.75
FOXN3O00409 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.1□□□□□ -1.75
FOXN3O00409 AL662791.1-201ENST00000441992 928 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 AC093392.2-201ENST00000450682 337 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 RNU7-170P-201ENST00000459303 61 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 AC010631.1-201ENST00000474150 156 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXN3O00409 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 KCTD9P5-201ENST00000504141 1170 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.1□□□□□ -1.75
FOXN3O00409 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 MTCO1P35-201ENST00000515270 228 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 RNA5SP208-201ENST00000516156 78 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 RNU6-314P-201ENST00000516574 104 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 RNU6-352P-201ENST00000516908 107 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 AC128657.1-201ENST00000549459 145 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 AC107016.1-201ENST00000550463 337 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 OR4H12P-201ENST00000556269 907 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXN3O00409 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.1□□□□□ -1.75
FOXN3O00409 AL022154.1-201ENST00000604698 785 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 AL137849.1-201ENST00000604767 169 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXN3O00409 XIST_intron.1-201ENST00000619444 68 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 MIR6863-201ENST00000636112 90 ntBASIC4.1□□□□□ -1.75
FOXN3O00409 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
FOXN3O00409 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXN3O00409 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXN3O00409 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.1□□□□□ -1.75
FOXN3O00409 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXN3O00409 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
FOXN3O00409 NCAPGP1-201ENST00000505112 1814 ntBASIC4.09□□□□□ -1.75
FOXN3O00409 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXN3O00409 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.09□□□□□ -1.75
FOXN3O00409 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
FOXN3O00409 RNU6-181P-201ENST00000363225 107 ntBASIC4.09□□□□□ -1.75
FOXN3O00409 U3.11-201ENST00000364476 212 ntBASIC4.09□□□□□ -1.75
FOXN3O00409 RNA5SP97-201ENST00000365006 84 ntBASIC4.09□□□□□ -1.75
FOXN3O00409 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXN3O00409 RNU6-39P-201ENST00000384344 107 ntBASIC4.09□□□□□ -1.75
FOXN3O00409 Y_RNA.554-201ENST00000384672 102 ntBASIC4.09□□□□□ -1.75
FOXN3O00409 AC110754.1-201ENST00000399740 601 ntBASIC4.09□□□□□ -1.75
FOXN3O00409 AP000567.1-201ENST00000406413 156 ntBASIC4.09□□□□□ -1.75
FOXN3O00409 MTHFD2P2-201ENST00000407725 247 ntBASIC4.09□□□□□ -1.75
FOXN3O00409 MTND3P17-201ENST00000416968 344 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms