Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNU6-38P-201ENST00000384085 107 ntBASIC4.46□□□□□ -1.7
CBX4O00257 RNU6-1181P-201ENST00000384191 106 ntBASIC4.46□□□□□ -1.7
CBX4O00257 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CBX4O00257 RPL32P23-201ENST00000397237 405 ntBASIC4.46□□□□□ -1.7
CBX4O00257 SNORA11F-201ENST00000408237 128 ntBASIC4.46□□□□□ -1.7
CBX4O00257 VDAC1P9-201ENST00000412766 841 ntBASIC4.46□□□□□ -1.7
CBX4O00257 EI24P1-201ENST00000416584 867 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.46□□□□□ -1.7
CBX4O00257 RPL7P46-201ENST00000425129 740 ntBASIC4.46□□□□□ -1.7
CBX4O00257 MTCO1P39-201ENST00000426148 480 ntBASIC4.46□□□□□ -1.7
CBX4O00257 MTATP6P4-201ENST00000427725 675 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.46□□□□□ -1.7
CBX4O00257 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CBX4O00257 AC073587.1-201ENST00000447093 876 ntBASIC4.46□□□□□ -1.7
CBX4O00257 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.46□□□□□ -1.7
CBX4O00257 RNU6-333P-201ENST00000459117 107 ntBASIC4.46□□□□□ -1.7
CBX4O00257 RNU7-180P-201ENST00000459240 63 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC010285.1-201ENST00000470580 392 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC105137.1-201ENST00000484355 562 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.46□□□□□ -1.7
CBX4O00257 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.46□□□□□ -1.7
CBX4O00257 RNU6-352P-201ENST00000516908 107 ntBASIC4.46□□□□□ -1.7
CBX4O00257 RNU6-1314P-201ENST00000517139 104 ntBASIC4.46□□□□□ -1.7
CBX4O00257 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC022882.1-201ENST00000532142 501 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC087241.2-201ENST00000535801 324 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.46□□□□□ -1.7
CBX4O00257 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.46□□□□□ -1.7
CBX4O00257 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.46□□□□□ -1.7
CBX4O00257 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.46□□□□□ -1.7
CBX4O00257 AC025884.1-201ENST00000556034 378 ntBASIC4.46□□□□□ -1.7
CBX4O00257 FAM60BP-201ENST00000578364 658 ntBASIC4.46□□□□□ -1.7
CBX4O00257 RN7SL176P-201ENST00000580352 264 ntBASIC4.46□□□□□ -1.7
CBX4O00257 IPO5P1-202ENST00000600039 287 ntBASIC4.46□□□□□ -1.7
CBX4O00257 BDH2P1-201ENST00000602288 736 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC174048.1-201ENST00000603389 144 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC087045.1-201ENST00000605856 382 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC140479.6-201ENST00000633535 357 ntBASIC4.46□□□□□ -1.7
CBX4O00257 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CBX4O00257 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
CBX4O00257 EOGT-210ENST00000615922 1931 ntBASIC4.46□□□□□ -1.7
CBX4O00257 AC009812.4-201ENST00000569134 1805 ntBASIC4.46□□□□□ -1.7
CBX4O00257 TPTE2P4-201ENST00000258589 1605 ntBASIC4.46□□□□□ -1.7
CBX4O00257 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CBX4O00257 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CBX4O00257 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CBX4O00257 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CBX4O00257 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CBX4O00257 RNA5SP175-201ENST00000364275 119 ntBASIC4.45□□□□□ -1.7
CBX4O00257 AL359837.1-201ENST00000381357 287 ntBASIC4.45□□□□□ -1.7
CBX4O00257 RN7SKP32-201ENST00000410167 303 ntBASIC4.45□□□□□ -1.7
CBX4O00257 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.45□□□□□ -1.7
CBX4O00257 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.45□□□□□ -1.7
CBX4O00257 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.45□□□□□ -1.7
CBX4O00257 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.45□□□□□ -1.7
CBX4O00257 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC4.45□□□□□ -1.7
CBX4O00257 MTCO3P46-201ENST00000425787 232 ntBASIC4.45□□□□□ -1.7
CBX4O00257 RPL7L1P10-201ENST00000427790 463 ntBASIC4.45□□□□□ -1.7
CBX4O00257 AC079780.1-201ENST00000428259 207 ntBASIC4.45□□□□□ -1.7
CBX4O00257 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.45□□□□□ -1.7
CBX4O00257 RPL23AP65-201ENST00000475608 468 ntBASIC4.45□□□□□ -1.7
CBX4O00257 TRBV1-201ENST00000476502 284 ntBASIC4.45□□□□□ -1.7
CBX4O00257 RPS27AP13-201ENST00000498403 237 ntBASIC4.45□□□□□ -1.7
CBX4O00257 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CBX4O00257 RNU6-677P-201ENST00000516914 101 ntBASIC4.45□□□□□ -1.7
CBX4O00257 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.45□□□□□ -1.7
CBX4O00257 AP006587.4-201ENST00000526053 529 ntBASIC4.45□□□□□ -1.7
CBX4O00257 AL137161.1-201ENST00000532231 390 ntBASIC4.45□□□□□ -1.7
CBX4O00257 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.45□□□□□ -1.7
CBX4O00257 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.45□□□□□ -1.7
CBX4O00257 AC034105.4-201ENST00000568304 277 ntBASIC4.45□□□□□ -1.7
CBX4O00257 RPL23AP84-201ENST00000571193 464 ntBASIC4.45□□□□□ -1.7
CBX4O00257 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.45□□□□□ -1.7
CBX4O00257 AC104763.2-201ENST00000604179 382 ntBASIC4.45□□□□□ -1.7
CBX4O00257 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.45□□□□□ -1.7
CBX4O00257 MIR92B-201ENST00000607575 96 ntBASIC4.45□□□□□ -1.7
CBX4O00257 AC012409.4-201ENST00000612923 249 ntBASIC4.45□□□□□ -1.7
CBX4O00257 AL390240.1-201ENST00000612950 384 ntBASIC4.45□□□□□ -1.7
CBX4O00257 AL021997.2-201ENST00000615674 271 ntBASIC4.45□□□□□ -1.7
CBX4O00257 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
CBX4O00257 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
CBX4O00257 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CBX4O00257 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.45□□□□□ -1.7
CBX4O00257 AC103710.2-202ENST00000641454 2853 ntBASIC4.45□□□□□ -1.7
CBX4O00257 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.45□□□□□ -1.7
CBX4O00257 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
CBX4O00257 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.45□□□□□ -1.7
CBX4O00257 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
CBX4O00257 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CBX4O00257 MTND4P35-201ENST00000604257 1375 ntBASIC4.44□□□□□ -1.7
CBX4O00257 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CBX4O00257 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CBX4O00257 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
CBX4O00257 SNORD81.2-201ENST00000365153 76 ntBASIC4.44□□□□□ -1.7
CBX4O00257 RNU6-190P-201ENST00000384154 102 ntBASIC4.44□□□□□ -1.7
CBX4O00257 AL583835.1-201ENST00000399570 407 ntBASIC4.44□□□□□ -1.7
CBX4O00257 AL592114.1-201ENST00000403842 483 ntBASIC4.44□□□□□ -1.7
CBX4O00257 Y_RNA.615-201ENST00000410769 117 ntBASIC4.44□□□□□ -1.7
CBX4O00257 SNORA74C-2-201ENST00000411179 201 ntBASIC4.44□□□□□ -1.7
CBX4O00257 RPL23AP26-201ENST00000412728 464 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms