Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 AC016251.2-201ENST00000623393 3089 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 BTBD10P1-201ENST00000549824 1352 ntBASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC61Q9Y6R9 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 Y_RNA.121-201ENST00000363309 113 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 RNU6-1243P-201ENST00000364028 107 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 RNU4-11P-201ENST00000365287 132 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 SNORA22-201ENST00000383907 134 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 RNU6-1293P-201ENST00000384077 107 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 RNU6-14P-201ENST00000384630 106 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 RNU6ATAC7P-201ENST00000408111 127 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 USP9YP7-201ENST00000436723 430 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 USP9YP32-201ENST00000452432 430 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 AC073901.1-201ENST00000462471 408 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 SNRPGP16-201ENST00000533275 226 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 AC092490.3-201ENST00000545370 572 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 AC055872.1-201ENST00000570978 278 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 MIR5582-201ENST00000579697 68 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 RNU6-156P-201ENST00000621869 107 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 AC005225.5-201ENST00000623547 2225 ntBASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 MAK-202ENST00000354489 3941 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC61Q9Y6R9 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 GNG5P2-201ENST00000372054 207 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 SNORD51-201ENST00000384320 80 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 U3.29-201ENST00000391296 212 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 AL022722.2-201ENST00000402519 180 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 POLR2KP2-201ENST00000438155 177 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 RPL23AP58-201ENST00000440453 469 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 AL356981.1-201ENST00000454879 684 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 SNORD125-201ENST00000459538 96 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 AC009127.1-201ENST00000467090 155 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 AC005912.1-201ENST00000495392 255 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 HMGN1P11-201ENST00000508668 303 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 RNU6-27P-201ENST00000516146 107 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 LDHC-205ENST00000537486 583 ntTSL 5 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 EDDM3DP-201ENST00000554692 434 ntBASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
CCDC61Q9Y6R9 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 Y_RNA.446-201ENST00000384178 104 ntBASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 RPL7AP73-201ENST00000413490 353 ntBASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 AL096701.2-201ENST00000416920 238 ntBASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 RN7SKP179-201ENST00000516126 217 ntBASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 MIR4423-201ENST00000580922 80 ntBASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC61Q9Y6R9 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 AC104162.1-201ENST00000430831 2382 ntBASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC61Q9Y6R9 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms