Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 CBWD4P-201ENST00000445695 655 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AL121877.1-201ENST00000453704 622 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 SNRPGP3-201ENST00000469405 227 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AC126389.1-201ENST00000477436 290 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AC116562.3-201ENST00000506136 177 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 RNU6-927P-201ENST00000516199 100 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 RNA5SP291-201ENST00000517222 105 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AC068587.5-201ENST00000528506 175 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AL359212.1-201ENST00000556608 614 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AC011471.1-201ENST00000585766 187 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AL391646.1-201ENST00000603860 190 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AL359880.1-201ENST00000621879 266 ntBASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC9Q9Y3X0 BDP1P-201ENST00000582658 1990 ntBASIC5.65□□□□□ -1.51
CCDC9Q9Y3X0 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
CCDC9Q9Y3X0 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC9Q9Y3X0 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC9Q9Y3X0 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
CCDC9Q9Y3X0 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 RNU6-946P-201ENST00000383878 107 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 RNU6-1197P-201ENST00000391183 107 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 NDUFB4P4-201ENST00000404822 243 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 SNORA57.3-201ENST00000411095 141 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 FCF1P9-201ENST00000412546 282 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 ISCA1P1-201ENST00000426679 387 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 NDUFB4P6-201ENST00000436819 366 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 RPL23AP46-201ENST00000438548 490 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 NDUFAF4P4-201ENST00000454883 502 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 RPS20P22-201ENST00000473700 357 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AC026403.1-201ENST00000518938 295 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 ATP5F1P5-201ENST00000526403 760 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AC136619.2-201ENST00000563361 631 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AC067852.3-201ENST00000589177 561 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AC104763.2-201ENST00000604179 382 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AC013553.2-201ENST00000604244 589 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AC007619.2-201ENST00000605743 379 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AC012531.5-201ENST00000611375 151 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 AC010733.2-201ENST00000589496 5702 ntBASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
CCDC9Q9Y3X0 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 RNU6-179P-201ENST00000363350 107 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 Y_RNA.159-201ENST00000363674 87 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 RNU6-741P-201ENST00000383889 107 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 RNU6-74P-201ENST00000384235 107 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 RNU6-517P-201ENST00000384362 110 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 MIR181A1-201ENST00000385026 110 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 RNU2-9P-201ENST00000410194 145 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 TMEM167AP1-201ENST00000423409 219 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 TAAR7P-201ENST00000436141 242 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 HMGN2P7-201ENST00000456186 273 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 RNU6-953P-201ENST00000459154 107 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 HSPD1P15-201ENST00000505573 1122 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AC090281.1-201ENST00000523019 276 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AP001646.1-201ENST00000527936 915 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AP003034.1-201ENST00000534621 422 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AC012417.1-201ENST00000582307 1039 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AC007363.1-201ENST00000604736 620 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 U4.5-201ENST00000617137 123 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AC015914.2-201ENST00000618167 288 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 AC139792.3-201ENST00000623525 224 ntBASIC5.63□□□□□ -1.51
CCDC9Q9Y3X0 MAPK10-303ENST00000641324 3959 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms