Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 U2.1-201ENST00000618978 145 ntBASIC5.9□□□□□ -1.46
COL17A1Q9UMD9 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC5.9□□□□□ -1.46
COL17A1Q9UMD9 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL17A1Q9UMD9 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 RNU6-774P-201ENST00000363238 107 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 SET-203ENST00000372688 801 ntTSL 2 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AL162578.1-201ENST00000406202 378 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 MIR320C1-201ENST00000408566 88 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC234781.4-201ENST00000419384 244 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 BX890604.2-201ENST00000427883 474 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 HMGB3P12-201ENST00000438745 556 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC005008.1-201ENST00000456151 612 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 MEMO1P3-201ENST00000459811 302 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 Y_RNA.718-201ENST00000517110 102 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 SNRPGP18-201ENST00000553000 214 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC068714.1-201ENST00000559623 800 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 MIR4680-201ENST00000580906 66 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC009977.1-201ENST00000586015 570 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC073539.2-201ENST00000597113 165 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC243773.3-201ENST00000613270 256 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 MIR7112-201ENST00000616126 65 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 uc_338.22-201ENST00000622722 187 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC079597.1-201ENST00000624306 508 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 AC110994.2-201ENST00000635481 492 ntBASIC5.9□□□□□ -1.47
COL17A1Q9UMD9 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 MTND5P7-201ENST00000413558 1798 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 AC090337.1-201ENST00000579651 2074 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 OR5J1P-201ENST00000313544 939 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 Y_RNA.197-201ENST00000364004 102 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 SNORA32.2-201ENST00000384049 122 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 HMGB3P2-201ENST00000411913 584 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 AC112204.1-201ENST00000502591 103 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 RNU6-1143P-201ENST00000516125 104 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 Y_RNA.691-201ENST00000516611 103 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 AC008562.1-201ENST00000521763 330 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 AC013828.2-201ENST00000532487 235 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 AC004696.1-201ENST00000614345 607 ntBASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 ATM-228ENST00000639240 498 ntTSL 5 BASIC5.89□□□□□ -1.47
COL17A1Q9UMD9 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 RNU6-1103P-201ENST00000384150 107 ntBASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 SNORD116-29-201ENST00000384516 83 ntBASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 MTND3P8-201ENST00000412909 339 ntBASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 AC109583.1-201ENST00000432156 268 ntBASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 AC083863.1-201ENST00000438811 231 ntBASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 RPL32P28-201ENST00000443577 397 ntBASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 RN7SL271P-201ENST00000487601 295 ntBASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 AC009812.2-201ENST00000517657 457 ntBASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 IGLV3-26-201ENST00000520756 302 ntBASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 AC022634.1-201ENST00000520765 532 ntBASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 RPL23AP87-202ENST00000573039 466 ntBASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.88□□□□□ -1.47
COL17A1Q9UMD9 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL17A1Q9UMD9 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL17A1Q9UMD9 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
COL17A1Q9UMD9 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL17A1Q9UMD9 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.87□□□□□ -1.47
COL17A1Q9UMD9 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
COL17A1Q9UMD9 Y_RNA.117-201ENST00000363294 101 ntBASIC5.87□□□□□ -1.47
COL17A1Q9UMD9 RNU6-359P-201ENST00000365466 108 ntBASIC5.87□□□□□ -1.47
COL17A1Q9UMD9 Y_RNA.489-201ENST00000384410 101 ntBASIC5.87□□□□□ -1.47
COL17A1Q9UMD9 AL592114.1-201ENST00000403842 483 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms