Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.42□□□□□ -1.7
NUP88Q99567 AC026726.1-201ENST00000512859 601 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.42□□□□□ -1.7
NUP88Q99567 AC010342.1-201ENST00000514047 877 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC4.42□□□□□ -1.7
NUP88Q99567 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.42□□□□□ -1.7
NUP88Q99567 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.42□□□□□ -1.7
NUP88Q99567 AC022616.3-201ENST00000523940 148 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 AC008489.1-201ENST00000524271 483 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 AC136619.2-201ENST00000563361 631 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC4.42□□□□□ -1.7
NUP88Q99567 MIR3922-201ENST00000585192 84 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 AC069200.1-201ENST00000609511 323 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 TUG1_2.1-201ENST00000614234 87 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.42□□□□□ -1.7
NUP88Q99567 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC4.42□□□□□ -1.7
NUP88Q99567 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
NUP88Q99567 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
NUP88Q99567 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NUP88Q99567 RNU4-1-201ENST00000363925 141 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 RNA5SP51-201ENST00000364750 119 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NUP88Q99567 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NUP88Q99567 RNU1-89P-201ENST00000384592 164 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 RPL23AP48-201ENST00000406913 488 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 RNU6ATAC25P-201ENST00000408798 117 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.41□□□□□ -1.7
NUP88Q99567 AC006946.1-201ENST00000429106 328 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AC002486.1-201ENST00000435098 391 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AF228730.2-201ENST00000438784 848 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 SNORA71B-202ENST00000439232 272 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 DNAJC19P4-201ENST00000440115 345 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AC008481.1-201ENST00000463278 396 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AP000873.1-201ENST00000463987 400 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 RPL7L1P8-201ENST00000469911 741 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AC023194.1-201ENST00000493084 308 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 RPL23AP55-201ENST00000498163 452 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.41□□□□□ -1.7
NUP88Q99567 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC4.41□□□□□ -1.7
NUP88Q99567 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
NUP88Q99567 SNRPGP16-201ENST00000533275 226 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AC123904.3-201ENST00000547218 814 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AC107016.1-201ENST00000550463 337 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 SUB1P2-201ENST00000556401 297 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.41□□□□□ -1.7
NUP88Q99567 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.41□□□□□ -1.7
NUP88Q99567 MIR3167-201ENST00000579623 85 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AC020914.4-201ENST00000597690 277 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AC107304.1-201ENST00000604229 296 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AP001330.4-201ENST00000604350 154 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AL136363.1-201ENST00000605349 337 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 MIR486-1-201ENST00000612171 68 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 U6atac.1-201ENST00000616025 117 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 AC091905.1-201ENST00000624400 311 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.41□□□□□ -1.7
NUP88Q99567 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.41□□□□□ -1.7
NUP88Q99567 IPO8P1-201ENST00000455509 3109 ntBASIC4.41□□□□□ -1.7
NUP88Q99567 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
NUP88Q99567 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.41□□□□□ -1.7
NUP88Q99567 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
NUP88Q99567 TAB3P1-202ENST00000452645 1634 ntBASIC4.4□□□□□ -1.7
NUP88Q99567 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
NUP88Q99567 OR5J1P-201ENST00000313544 939 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 RNU6-181P-201ENST00000363225 107 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 U3.11-201ENST00000364476 212 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 RNA5SP189-201ENST00000364920 115 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 SNORA23-201ENST00000365128 182 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 RNU6-282P-201ENST00000365357 103 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 RNA5SP44-201ENST00000410446 133 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.4□□□□□ -1.71
NUP88Q99567 UBE2V1P10-201ENST00000414685 269 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.4□□□□□ -1.71
NUP88Q99567 ATP5HP2-201ENST00000433885 485 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 AC090774.1-201ENST00000435925 246 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
NUP88Q99567 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.4□□□□□ -1.71
NUP88Q99567 AL662791.1-201ENST00000441992 928 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC4.4□□□□□ -1.71
NUP88Q99567 AC140076.1-201ENST00000449897 361 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 RPS24P6-201ENST00000452670 400 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 AC133473.1-201ENST00000455173 299 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 RPL23AP31-201ENST00000456160 467 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.4□□□□□ -1.71
NUP88Q99567 NIPA2P2-201ENST00000496376 1083 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.4□□□□□ -1.71
NUP88Q99567 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.4□□□□□ -1.71
NUP88Q99567 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.4□□□□□ -1.71
NUP88Q99567 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.4□□□□□ -1.71
NUP88Q99567 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC4.4□□□□□ -1.71
NUP88Q99567 GMPSP1-201ENST00000514075 579 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 RN7SKP244-201ENST00000516513 307 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 RNU6-445P-201ENST00000516949 107 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 FAM60DP-201ENST00000524174 632 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 OR5G4P-201ENST00000525251 760 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
NUP88Q99567 FAM92A1P1-201ENST00000528023 890 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
NUP88Q99567 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 167 ms