Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS35Q96QK1 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 DDX43P2-201ENST00000604753 1354 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC108206.1-201ENST00000570186 4159 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 RNU6-97P-201ENST00000363387 104 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 RNU4-92P-201ENST00000363783 136 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 SNORA44-201ENST00000384584 132 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 MIR128-1-201ENST00000384921 82 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 RNU6-1242P-201ENST00000391052 103 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 RPL21P75-201ENST00000396599 483 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 RPL21P28-201ENST00000401418 483 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AL592114.1-201ENST00000403842 483 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 PPP1R11P2-201ENST00000423543 382 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 MTCO2P23-201ENST00000425216 680 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 ZYG11AP1-201ENST00000430329 837 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 RPL21P39-201ENST00000463605 483 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 RPL21P93-201ENST00000480465 489 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC233702.1-201ENST00000482905 502 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC087190.1-201ENST00000484462 480 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC093591.1-201ENST00000491435 481 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 RPL30P5-201ENST00000494923 336 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 RPL21P16-201ENST00000495531 483 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 GMPSP1-201ENST00000514075 579 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AP000867.2-201ENST00000532468 320 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC022080.3-201ENST00000544433 482 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC012119.1-201ENST00000603184 222 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC107871.2-201ENST00000612894 502 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC004696.1-201ENST00000614345 607 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC090132.2-201ENST00000615881 347 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 AC006386.1-201ENST00000619436 415 ntBASIC2.91□□□□□ -1.94
VPS35Q96QK1 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.91□□□□□ -1.94
VPS35Q96QK1 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
VPS35Q96QK1 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.9□□□□□ -1.94
VPS35Q96QK1 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 ZNF29P-201ENST00000225587 168 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 CD24P4-201ENST00000382840 243 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 RNU6-1207P-201ENST00000384343 107 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 RNU6-636P-201ENST00000384598 107 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC096664.2-201ENST00000411843 406 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 USP9YP33-201ENST00000412220 421 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC234781.2-201ENST00000426370 994 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AL139132.1-201ENST00000431587 344 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 USP9YP35-201ENST00000435696 412 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 SNRPEP7-201ENST00000438350 220 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC004854.1-201ENST00000440356 349 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 AL009048.1-201ENST00000450437 298 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 SNRPGP6-201ENST00000451124 220 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC104563.1-201ENST00000476147 376 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 HMGB1P36-201ENST00000487709 576 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AL049874.1-201ENST00000489560 388 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC010587.2-201ENST00000511727 448 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 RNA5SP76-201ENST00000516277 87 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC090695.1-201ENST00000561269 1222 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC034105.3-201ENST00000565294 442 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 MIR3609-201ENST00000582661 80 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC015871.2-201ENST00000603605 948 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AL133507.1-201ENST00000605269 557 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC106052.1-201ENST00000608029 497 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 AP003122.6-201ENST00000623831 495 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 AC087359.1-201ENST00000508335 1740 ntBASIC2.9□□□□□ -1.95
VPS35Q96QK1 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS35Q96QK1 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
VPS35Q96QK1 AC233263.6-201ENST00000631132 1963 ntBASIC2.89□□□□□ -1.95
VPS35Q96QK1 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
VPS35Q96QK1 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS35Q96QK1 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
VPS35Q96QK1 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS35Q96QK1 RNU6-906P-201ENST00000384700 70 ntBASIC2.89□□□□□ -1.95
VPS35Q96QK1 UBA52P6-201ENST00000399822 382 ntBASIC2.89□□□□□ -1.95
VPS35Q96QK1 RNA5SP492-201ENST00000411330 114 ntBASIC2.89□□□□□ -1.95
VPS35Q96QK1 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.89□□□□□ -1.95
VPS35Q96QK1 AC022018.1-201ENST00000430685 241 ntBASIC2.89□□□□□ -1.95
VPS35Q96QK1 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS35Q96QK1 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS35Q96QK1 SDR42E1P3-201ENST00000438345 502 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms