Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MIR514B-201ENST00000516774 80 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 COX6CP5-201ENST00000527162 228 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 AC009097.3-201ENST00000563557 1018 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 ATP5F1P7-201ENST00000567330 760 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC42Q96M95 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 BX322635.1-201ENST00000605804 496 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 VN1R74P-201ENST00000613259 503 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 AC079395.3-201ENST00000615161 484 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 HMGB1P24-202ENST00000615653 685 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 AL031601.2-202ENST00000622650 282 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 AC007998.5-201ENST00000622938 237 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 AC091925.2-201ENST00000625059 256 ntBASIC2.21□□□□□ -2.06
CCDC42Q96M95 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC42Q96M95 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC42Q96M95 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC42Q96M95 AL022578.1-201ENST00000439330 1433 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 RNU6-270P-201ENST00000364131 105 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 MIR483-201ENST00000385070 76 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 MIR767-201ENST00000390228 109 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 U3.26-201ENST00000391236 204 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 SNORA11.1-201ENST00000408133 129 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 ARL2BPP3-201ENST00000421226 480 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 MTCYBP3-201ENST00000445588 1137 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 COX6CP12-201ENST00000446748 202 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 RPL31P60-201ENST00000478450 367 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 MIR3162-201ENST00000581818 82 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 AC002487.1-201ENST00000604565 994 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 AC120053.1-201ENST00000607706 736 ntBASIC2.2□□□□□ -2.06
CCDC42Q96M95 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC42Q96M95 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC42Q96M95 AC009902.3-201ENST00000606235 2172 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC42Q96M95 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC42Q96M95 AC027124.2-201ENST00000428249 105 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 RPS15AP27-201ENST00000449183 343 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 RNU6-420P-201ENST00000458780 107 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 AC104164.3-201ENST00000467363 1258 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 AC078857.1-201ENST00000469870 667 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC42Q96M95 NDUFB4P2-201ENST00000509515 391 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC42Q96M95 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC42Q96M95 ZNF705CP-201ENST00000530515 889 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CCDC42Q96M95 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.19□□□□□ -2.06
CCDC42Q96M95 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC42Q96M95 AC026464.5-201ENST00000562497 722 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 AL138976.2-201ENST00000563989 694 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 MIR3935-201ENST00000583472 104 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 DUXAP9-208ENST00000622815 614 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
CCDC42Q96M95 AL359851.1-201ENST00000569460 4997 ntBASIC2.19□□□□□ -2.06
CCDC42Q96M95 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CCDC42Q96M95 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
CCDC42Q96M95 AC022336.2-201ENST00000568966 2538 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC42Q96M95 ANKRD36P1-201ENST00000344424 659 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 DEFB108F-201ENST00000344638 222 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 RNU1-73P-201ENST00000383971 164 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 SNORD51-201ENST00000384320 80 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 RNU6-882P-201ENST00000391025 103 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC42Q96M95 RNU6-77P-201ENST00000410554 91 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 RNU4-53P-201ENST00000410828 140 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 UBE2V1P11-201ENST00000411559 285 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC42Q96M95 UBE2FP3-201ENST00000436366 524 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC42Q96M95 CBWD4P-201ENST00000445695 655 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC42Q96M95 RNU7-26P-201ENST00000458980 63 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 RNU7-23P-201ENST00000459465 62 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 MTCYBP17-201ENST00000503579 789 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 AC093767.1-201ENST00000504523 156 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC42Q96M95 AC006390.1-201ENST00000508068 283 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 AL359273.1-201ENST00000510918 627 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 AC008413.1-201ENST00000511864 177 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 MRPS36P2-201ENST00000512569 299 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 RNU6-798P-201ENST00000516912 103 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 RNA5SP364-201ENST00000516938 78 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 DEFB108D-201ENST00000527787 222 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC42Q96M95 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC42Q96M95 MIR3921-201ENST00000577308 85 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 MIR3616-201ENST00000584070 92 ntBASIC2.18□□□□□ -2.06
CCDC42Q96M95 AC011471.1-201ENST00000585766 187 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms