Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 YWHAEP7-203ENST00000622054 312 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 AP003399.1-201ENST00000637534 361 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 TPTE2P4-201ENST00000258589 1605 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC016769.3-201ENST00000396562 315 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 SSR1P1-201ENST00000407630 814 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 RPL23AP39-201ENST00000415533 405 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 BOLA3P4-201ENST00000418151 400 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 BTF3P9-201ENST00000418784 283 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC234781.2-201ENST00000426370 994 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AL445669.1-201ENST00000426743 755 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 TSACC-207ENST00000470342 601 ntTSL 2 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC114801.2-201ENST00000503825 781 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC093801.2-201ENST00000503966 1050 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 WBP1LP4-201ENST00000505043 344 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC104090.1-201ENST00000506341 1171 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 RNA5SP341-201ENST00000516261 117 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 RNA5SP61-201ENST00000516453 100 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 GTF2IP8-201ENST00000560687 584 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC005412.1-201ENST00000580812 1049 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC016925.2-201ENST00000605108 242 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC093732.2-201ENST00000607950 274 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AC103710.1-201ENST00000610003 901 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 AL592148.2-201ENST00000612210 372 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 MIR6817-201ENST00000615588 66 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 CTSLP2-204ENST00000629029 392 ntBASIC0.93□□□□□ -2.26
LINC00643Q86TS7 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
LINC00643Q86TS7 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 MIR758-201ENST00000390227 88 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 MCTS2P-201ENST00000394552 546 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 MIR1304-201ENST00000408243 91 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 TATDN1P1-201ENST00000414123 891 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AC063976.3-201ENST00000426849 329 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AC006548.1-201ENST00000427470 102 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AC092573.2-201ENST00000434546 243 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 HMGB1P18-201ENST00000438801 619 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 HMGB1P26-201ENST00000452520 628 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AP001992.1-205ENST00000462248 379 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 RNA5SP148-201ENST00000516527 94 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 CR383656.14-201ENST00000551951 406 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AC026464.5-201ENST00000562497 722 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AC105036.1-201ENST00000566222 271 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 RN7SL753P-201ENST00000581238 290 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AP001485.1-201ENST00000604799 199 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AL442067.2-201ENST00000614033 363 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AC006338.1-201ENST00000618453 749 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 MIR6873-201ENST00000622788 63 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 CR381572.1-201ENST00000625098 102 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 ZNF876P-202ENST00000398732 1485 ntBASIC0.92□□□□□ -2.26
LINC00643Q86TS7 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC0.92□□□□□ -2.26
LINC00643Q86TS7 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 UBE2L2-201ENST00000254302 429 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 RNU4-23P-201ENST00000362839 140 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 RNU1-72P-201ENST00000362976 153 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 RNA5SP267-201ENST00000364893 126 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 MIR196B-201ENST00000384852 84 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AL079342.1-201ENST00000401460 267 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AL049693.1-201ENST00000402760 611 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 RNU2-41P-201ENST00000410991 178 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AL158156.1-201ENST00000422509 473 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 BX510359.4-201ENST00000423750 193 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC108938.1-201ENST00000451204 136 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 SUMO2P2-201ENST00000456482 255 ntBASIC0.91□□□□□ -2.26
LINC00643Q86TS7 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms