Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 AC034268.2-201ENST00000571784 482 ntBASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 MIR1254-2-201ENST00000579553 63 ntBASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 MIR3611-201ENST00000584484 83 ntBASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 AC010928.3-201ENST00000587712 541 ntBASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 SNRPGP15-201ENST00000600149 222 ntBASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 AL359999.1-201ENST00000604513 294 ntBASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 AC131902.3-201ENST00000611767 581 ntBASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
SYNE3Q6ZMZ3 AC017071.1-201ENST00000564407 2204 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 RNA5SP189-201ENST00000364920 115 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 RNU6-629P-201ENST00000384061 103 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 RNU6-348P-201ENST00000384386 107 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 Y_RNA.559-201ENST00000384686 107 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 MIR449B-201ENST00000384995 97 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 RNU2-47P-201ENST00000410649 186 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 RNU2-16P-201ENST00000410712 136 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 RNU6-55P-201ENST00000411092 107 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 RNU6-954P-201ENST00000411355 107 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 Z99755.1-201ENST00000414048 380 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 USP9YP13-201ENST00000417797 480 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AC069157.1-201ENST00000421749 137 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 CYCSP35-201ENST00000451978 304 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 LARP1BP2-201ENST00000486594 519 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 IGKV2-26-201ENST00000518305 343 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AP003467.2-201ENST00000520175 319 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 NDUFB9P3-201ENST00000521269 501 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AP004371.1-201ENST00000525240 214 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AP003122.4-201ENST00000530980 758 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AGGF1P4-201ENST00000568249 801 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AC011451.2-201ENST00000604303 598 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 AC109347.2-201ENST00000610220 349 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 MIR6130-201ENST00000619419 109 ntBASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SYNE3Q6ZMZ3 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 EI24P2-201ENST00000397776 1076 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AL663109.1-201ENST00000411498 844 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 BEND7P1-201ENST00000422058 457 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AL589823.1-201ENST00000429577 183 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 RPS24P6-201ENST00000452670 400 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 RPL23AP41-201ENST00000484754 458 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 APOOP4-201ENST00000513530 597 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AL121603.1-201ENST00000553815 142 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AC009977.1-201ENST00000586015 570 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AP001429.1-201ENST00000602568 530 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 XIAPP1-201ENST00000603162 600 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AL136363.2-201ENST00000604173 851 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AL355472.4-201ENST00000610233 626 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AC009159.1-201ENST00000618386 642 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 AC092125.1-201ENST00000562568 1995 ntBASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SYNE3Q6ZMZ3 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SYNE3Q6ZMZ3 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SYNE3Q6ZMZ3 AL157700.1-201ENST00000561973 1432 ntBASIC3.97□□□□□ -1.77
SYNE3Q6ZMZ3 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.97□□□□□ -1.77
SYNE3Q6ZMZ3 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms