Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.98□□□□□ -1.61
SF3A1Q15459 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.98□□□□□ -1.61
SF3A1Q15459 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SF3A1Q15459 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SF3A1Q15459 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SF3A1Q15459 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
SF3A1Q15459 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.97□□□□□ -1.61
SF3A1Q15459 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.97□□□□□ -1.61
SF3A1Q15459 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SF3A1Q15459 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SF3A1Q15459 RNU6-996P-201ENST00000365438 107 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 RNU6-61P-201ENST00000365528 109 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC4.97□□□□□ -1.61
SF3A1Q15459 AL356967.1-201ENST00000406305 431 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AL160275.2-201ENST00000412010 394 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AL161631.1-201ENST00000417933 486 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AC009480.2-201ENST00000422916 432 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 RBMY1KP-201ENST00000423480 476 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AC091390.3-201ENST00000426478 338 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.97□□□□□ -1.61
SF3A1Q15459 AC007919.1-201ENST00000429380 217 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AL132765.1-201ENST00000434165 553 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 SEPT14P3-201ENST00000439401 183 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AL732372.2-207ENST00000445840 183 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 SEPT14P2-201ENST00000453405 183 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 RPS23P3-201ENST00000470993 430 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AC109927.2-201ENST00000506416 303 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 SEPT14P4-201ENST00000513445 186 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.97□□□□□ -1.61
SF3A1Q15459 FO082796.1-201ENST00000523795 183 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 OR5B10P-201ENST00000532869 642 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 OR5BN1P-201ENST00000532955 829 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 HSPE1P5-201ENST00000561489 272 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.97□□□□□ -1.61
SF3A1Q15459 AC024619.4-201ENST00000580924 316 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AP000907.4-201ENST00000604143 237 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.97□□□□□ -1.61
SF3A1Q15459 AC012409.3-201ENST00000611343 981 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 AC007546.1-201ENST00000619452 559 ntBASIC4.97□□□□□ -1.61
SF3A1Q15459 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
SF3A1Q15459 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
SF3A1Q15459 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.96□□□□□ -1.61
SF3A1Q15459 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SF3A1Q15459 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.96□□□□□ -1.62
SF3A1Q15459 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.96□□□□□ -1.62
SF3A1Q15459 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC4.96□□□□□ -1.62
SF3A1Q15459 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.62
SF3A1Q15459 SNORA69-201ENST00000383895 132 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 RNU6-1029P-201ENST00000384109 107 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 SNORD37.1-201ENST00000390968 65 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 SOD2P1-201ENST00000396543 562 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 AMD1P2-201ENST00000412936 992 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.96□□□□□ -1.62
SF3A1Q15459 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.96□□□□□ -1.62
SF3A1Q15459 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.96□□□□□ -1.62
SF3A1Q15459 CYP4F29P-201ENST00000420685 446 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 NDUFB4P7-201ENST00000423198 363 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC4.96□□□□□ -1.62
SF3A1Q15459 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.96□□□□□ -1.62
SF3A1Q15459 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.96□□□□□ -1.62
SF3A1Q15459 AC000111.3-201ENST00000433478 193 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.96□□□□□ -1.62
SF3A1Q15459 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.96□□□□□ -1.62
SF3A1Q15459 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.96□□□□□ -1.62
SF3A1Q15459 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.96□□□□□ -1.62
SF3A1Q15459 MTND1P18-201ENST00000448191 573 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 FGF7P6-202ENST00000451282 293 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 HMGN2P16-201ENST00000456802 261 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 AL162395.1-201ENST00000457882 422 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 RNU6-927P-201ENST00000516199 100 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.96□□□□□ -1.62
SF3A1Q15459 AC234778.2-201ENST00000566241 354 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 AC104458.1-201ENST00000608243 463 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.96□□□□□ -1.62
SF3A1Q15459 AL365204.3-201ENST00000612448 685 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 RMST_9.1-201ENST00000619945 193 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 YWHAEP7-203ENST00000622054 312 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
SF3A1Q15459 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.96□□□□□ -1.62
SF3A1Q15459 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
SF3A1Q15459 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SF3A1Q15459 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
SF3A1Q15459 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SF3A1Q15459 OR56B2P-202ENST00000641377 2453 ntBASIC4.96□□□□□ -1.62
SF3A1Q15459 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SF3A1Q15459 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SF3A1Q15459 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.95□□□□□ -1.62
SF3A1Q15459 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SF3A1Q15459 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SF3A1Q15459 RNA5SP52-201ENST00000362448 134 ntBASIC4.95□□□□□ -1.62
SF3A1Q15459 RNU6-1287P-201ENST00000362914 107 ntBASIC4.95□□□□□ -1.62
SF3A1Q15459 RNA5SP175-201ENST00000364275 119 ntBASIC4.95□□□□□ -1.62
SF3A1Q15459 Y_RNA.295-201ENST00000364918 102 ntBASIC4.95□□□□□ -1.62
SF3A1Q15459 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SF3A1Q15459 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SF3A1Q15459 RNU6-877P-201ENST00000383868 107 ntBASIC4.95□□□□□ -1.62
SF3A1Q15459 RNU6-1060P-201ENST00000384664 107 ntBASIC4.95□□□□□ -1.62
SF3A1Q15459 RNU6-817P-201ENST00000391083 104 ntBASIC4.95□□□□□ -1.62
SF3A1Q15459 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms