Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SCN1BQ07699 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
SCN1BQ07699 SNORA70.2-201ENST00000364506 135 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 RNU6-809P-201ENST00000384461 107 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AL359634.1-202ENST00000404721 284 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 BTF3L4P3-201ENST00000418879 476 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 USP9YP26-201ENST00000421008 661 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AL645937.1-202ENST00000421799 937 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AL139247.1-201ENST00000422768 325 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 RPS27AP14-201ENST00000422868 454 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AL591419.1-201ENST00000427423 339 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.1□□□□□ -1.91
SCN1BQ07699 H2AFZP6-201ENST00000444403 394 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.1□□□□□ -1.91
SCN1BQ07699 GDI2P2-201ENST00000445131 608 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AC092798.1-201ENST00000458542 409 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SCN1BQ07699 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SCN1BQ07699 SCARNA14-201ENST00000516903 136 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AC107934.2-201ENST00000518653 310 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 OR8R1P-201ENST00000543943 764 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AC093012.1-202ENST00000549403 582 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 ZNF321P-202ENST00000550843 495 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.1□□□□□ -1.91
SCN1BQ07699 AL353778.1-201ENST00000603149 408 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AL161729.4-201ENST00000604650 476 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AL136363.1-201ENST00000605349 337 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.1□□□□□ -1.91
SCN1BQ07699 SNHG22-203ENST00000617833 660 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AC131159.1-201ENST00000621854 213 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AC002064.3-201ENST00000623448 346 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 AC073476.4-201ENST00000628409 72 ntBASIC3.1□□□□□ -1.91
SCN1BQ07699 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SCN1BQ07699 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SCN1BQ07699 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.1□□□□□ -1.91
SCN1BQ07699 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
SCN1BQ07699 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SCN1BQ07699 RNY4P24-201ENST00000362735 96 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 RNU6-140P-201ENST00000384566 108 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
SCN1BQ07699 AC007899.1-201ENST00000412776 775 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.09□□□□□ -1.91
SCN1BQ07699 NDUFB4P5-201ENST00000415445 361 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.09□□□□□ -1.91
SCN1BQ07699 AC244035.1-201ENST00000430042 390 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 AC010153.1-201ENST00000432862 727 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.09□□□□□ -1.91
SCN1BQ07699 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.09□□□□□ -1.91
SCN1BQ07699 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SCN1BQ07699 MTCYBP39-201ENST00000437562 491 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 AL714022.1-201ENST00000439897 151 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 RPL23AP58-201ENST00000440453 469 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.09□□□□□ -1.91
SCN1BQ07699 RPL12P25-201ENST00000455592 494 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.09□□□□□ -1.91
SCN1BQ07699 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.09□□□□□ -1.91
SCN1BQ07699 AC116337.2-201ENST00000477662 156 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SCN1BQ07699 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
SCN1BQ07699 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
SCN1BQ07699 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.09□□□□□ -1.91
SCN1BQ07699 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.09□□□□□ -1.91
SCN1BQ07699 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC3.09□□□□□ -1.91
SCN1BQ07699 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.09□□□□□ -1.91
SCN1BQ07699 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.09□□□□□ -1.91
SCN1BQ07699 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.09□□□□□ -1.91
SCN1BQ07699 AC012435.1-202ENST00000568772 240 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 AL356432.3-201ENST00000568952 465 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.09□□□□□ -1.91
SCN1BQ07699 MIR4293-201ENST00000584305 78 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.09□□□□□ -1.91
SCN1BQ07699 AC006077.1-201ENST00000604746 343 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 AC009159.2-201ENST00000617603 606 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.09□□□□□ -1.91
SCN1BQ07699 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.09□□□□□ -1.92
SCN1BQ07699 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
SCN1BQ07699 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.08□□□□□ -1.92
SCN1BQ07699 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.08□□□□□ -1.92
SCN1BQ07699 FTLP6-201ENST00000355274 422 ntBASIC3.08□□□□□ -1.92
SCN1BQ07699 RN7SKP280-201ENST00000364196 304 ntBASIC3.08□□□□□ -1.92
SCN1BQ07699 RNU6-278P-201ENST00000390945 109 ntBASIC3.08□□□□□ -1.92
SCN1BQ07699 MIR1289-1-201ENST00000408836 144 ntBASIC3.08□□□□□ -1.92
SCN1BQ07699 RN7SKP156-201ENST00000410308 342 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms