Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 HSPE1P1-201ENST00000421494 318 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 Z82205.1-201ENST00000428456 297 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 TRAPPC2P8-201ENST00000440676 396 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 Y_RNA.639-201ENST00000458981 102 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 RPL21P99-201ENST00000480369 423 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 AC004062.1-201ENST00000509926 645 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 AC104619.4-201ENST00000510773 249 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 FTH1P11-201ENST00000517577 551 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 OR5BN1P-201ENST00000532955 829 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.11□□□□□ -1.75
COL4A3Q01955 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.11□□□□□ -1.75
COL4A3Q01955 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.11□□□□□ -1.75
COL4A3Q01955 AC136443.5-201ENST00000603741 370 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 AP001330.4-201ENST00000604350 154 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 AL627309.6-201ENST00000606857 840 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 AL022345.1-201ENST00000607292 135 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 AC000123.2-201ENST00000623124 461 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.11□□□□□ -1.75
COL4A3Q01955 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A3Q01955 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
COL4A3Q01955 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
COL4A3Q01955 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.11□□□□□ -1.75
COL4A3Q01955 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A3Q01955 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A3Q01955 AP004289.2-201ENST00000444413 1457 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 MTCO1P12-201ENST00000414273 1543 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 Y_RNA.301-201ENST00000364990 103 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 SNORA57.3-201ENST00000411095 141 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A3Q01955 TIMM9P1-201ENST00000436122 256 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 RPS26P56-201ENST00000444468 240 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 RNU6-1218P-201ENST00000458990 108 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 HMGN2P26-201ENST00000463169 339 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 RPS4XP10-201ENST00000465034 731 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AL049714.1-201ENST00000466686 347 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 RPS20P21-201ENST00000466859 343 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 HSPD1P15-201ENST00000505573 1122 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AC074250.1-201ENST00000511117 192 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 RNU4-29P-201ENST00000515943 174 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 RNU6-347P-201ENST00000516658 105 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A3Q01955 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.1□□□□□ -1.75
COL4A3Q01955 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A3Q01955 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AC016925.2-201ENST00000605108 242 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC080078.3-201ENST00000605407 463 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A3Q01955 AL138820.1-201ENST00000617901 5305 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A3Q01955 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A3Q01955 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A3Q01955 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A3Q01955 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A3Q01955 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.1□□□□□ -1.75
COL4A3Q01955 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
COL4A3Q01955 Y_RNA.146-201ENST00000363549 102 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 RNY3P13-201ENST00000365542 102 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 Y_RNA.445-201ENST00000384168 102 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 RNU6-1013P-201ENST00000384180 107 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 MIR34B-201ENST00000385076 84 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A3Q01955 AL161631.1-201ENST00000417933 486 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AP000936.3-201ENST00000438127 255 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 IPO7P1-201ENST00000442031 636 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 RPS17P13-201ENST00000448974 407 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AL590639.1-201ENST00000456484 337 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AC108022.1-201ENST00000493466 478 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC005726.1-201ENST00000494679 427 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC025554.1-201ENST00000505641 188 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AC021146.1-201ENST00000511202 716 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 NARSP2-201ENST00000518524 679 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 OR5B10P-201ENST00000532869 642 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC093012.1-202ENST00000549403 582 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC060771.1-201ENST00000582031 164 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A3Q01955 POLR3GP2-201ENST00000588366 668 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A3Q01955 PSMA6P4-201ENST00000603247 718 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 CYP2C61P-201ENST00000604072 290 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A3Q01955 AC107294.1-201ENST00000609524 467 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AL132822.1-201ENST00000617063 513 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms