Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
COL4A4P53420 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC2.69□□□□□ -1.98
COL4A4P53420 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC2.69□□□□□ -1.98
COL4A4P53420 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A4P53420 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A4P53420 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC2.69□□□□□ -1.98
COL4A4P53420 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 RNU6-796P-201ENST00000391086 107 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 SNORA68.2-201ENST00000391263 128 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 MTCO1P56-201ENST00000401674 224 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A4P53420 TATDN1P1-201ENST00000414123 891 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.69□□□□□ -1.98
COL4A4P53420 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.69□□□□□ -1.98
COL4A4P53420 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.69□□□□□ -1.98
COL4A4P53420 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC2.69□□□□□ -1.98
COL4A4P53420 AC013410.1-201ENST00000436223 1232 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 PTGES3P1-201ENST00000439531 483 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 EEF1A1P39-201ENST00000440791 250 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.69□□□□□ -1.98
COL4A4P53420 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC2.69□□□□□ -1.98
COL4A4P53420 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC2.69□□□□□ -1.98
COL4A4P53420 HMGN2P23-201ENST00000456759 269 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC091179.1-201ENST00000461606 579 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 RPL30P6-201ENST00000475925 342 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.69□□□□□ -1.98
COL4A4P53420 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A4P53420 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 AC010424.1-201ENST00000506336 297 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 RN7SKP282-201ENST00000516824 299 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.69□□□□□ -1.98
COL4A4P53420 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC2.69□□□□□ -1.98
COL4A4P53420 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.69□□□□□ -1.98
COL4A4P53420 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.69□□□□□ -1.98
COL4A4P53420 AC078814.3-201ENST00000553036 491 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 AC245505.1-201ENST00000556398 224 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AL133241.1-201ENST00000556832 487 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC027104.1-201ENST00000563702 681 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 ACTR3BP3-201ENST00000565577 979 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC073544.2-201ENST00000601155 540 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 LARP7P1-201ENST00000605576 316 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC131235.4-201ENST00000609288 620 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC009509.4-201ENST00000619202 509 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 OR1S1-201ENST00000624470 978 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC026634.1-201ENST00000634369 198 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.69□□□□□ -1.98
COL4A4P53420 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC2.69□□□□□ -1.98
COL4A4P53420 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A4P53420 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A4P53420 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL4A4P53420 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
COL4A4P53420 AL136964.1-201ENST00000622038 2990 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL4A4P53420 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL4A4P53420 RNU5B-1-201ENST00000363286 116 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 RNU4-51P-201ENST00000364206 140 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 MTND1P21-201ENST00000412991 285 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 AC246680.2-201ENST00000422106 389 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 AC244035.1-201ENST00000430042 390 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 YWHAZP7-201ENST00000436906 631 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.68□□□□□ -1.98
COL4A4P53420 ARL5AP3-201ENST00000439327 386 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 FGF7P5-201ENST00000441829 291 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.68□□□□□ -1.98
COL4A4P53420 AL606662.1-201ENST00000445763 553 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 AL109741.2-201ENST00000455561 343 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC2.68□□□□□ -1.98
COL4A4P53420 AC109471.1-201ENST00000511631 612 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.68□□□□□ -1.98
COL4A4P53420 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.68□□□□□ -1.98
COL4A4P53420 AC104417.1-201ENST00000523974 751 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 OR7K1P-201ENST00000546439 926 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 NOP56P3-201ENST00000549457 385 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.68□□□□□ -1.98
COL4A4P53420 AC136619.2-201ENST00000563361 631 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.68□□□□□ -1.98
COL4A4P53420 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.68□□□□□ -1.98
COL4A4P53420 EIF1P4-201ENST00000572664 335 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 MIR4789-201ENST00000577469 82 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 AC022662.1-201ENST00000580252 331 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.68□□□□□ -1.98
COL4A4P53420 NRBF2P1-201ENST00000587407 859 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2.68□□□□□ -1.98
COL4A4P53420 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.68□□□□□ -1.98
COL4A4P53420 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 AL110115.1-201ENST00000614396 364 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
COL4A4P53420 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.68□□□□□ -1.98
COL4A4P53420 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL4A4P53420 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.68□□□□□ -1.98
COL4A4P53420 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.68□□□□□ -1.98
COL4A4P53420 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms