Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 DUXAP10-204ENST00000612052 616 ntBASIC2.6□□□□□ -1.99
RFX3P48380 PART1_2.1-201ENST00000612397 250 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AC243773.3-201ENST00000613270 256 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AL161629.2-201ENST00000615347 275 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AL355493.4-201ENST00000618530 292 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.6□□□□□ -1.99
RFX3P48380 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
RFX3P48380 CRYM-AS1-204ENST00000637983 556 ntBASIC2.6□□□□□ -1.99
RFX3P48380 AC010680.1-201ENST00000590024 3590 ntBASIC2.6□□□□□ -1.99
RFX3P48380 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
RFX3P48380 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.6□□□□□ -1.99
RFX3P48380 AC109315.1-201ENST00000584143 1347 ntBASIC2.6□□□□□ -1.99
RFX3P48380 TPTE2P4-201ENST00000258589 1605 ntBASIC2.6□□□□□ -1.99
RFX3P48380 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
RFX3P48380 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
RFX3P48380 AL356473.1-201ENST00000406203 1408 ntBASIC2.59□□□□□ -1.99
RFX3P48380 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.59□□□□□ -1.99
RFX3P48380 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
RFX3P48380 RNA5SP139-201ENST00000364340 117 ntBASIC2.59□□□□□ -1.99
RFX3P48380 MIR325-201ENST00000385260 98 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.59□□□□□ -1.99
RFX3P48380 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC2.59□□□□□ -1.99
RFX3P48380 AC009414.1-201ENST00000427200 443 ntBASIC2.59□□□□□ -1.99
RFX3P48380 RNF2P1-201ENST00000442955 1010 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC2.59□□□□□ -1.99
RFX3P48380 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.59□□□□□ -1.99
RFX3P48380 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.59□□□□□ -1.99
RFX3P48380 AC003982.1-202ENST00000469928 248 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AL135752.1-201ENST00000479477 471 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AP001025.2-201ENST00000490908 477 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AC097462.2-201ENST00000504623 481 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AC096571.1-202ENST00000506634 735 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AC009901.1-201ENST00000506703 541 ntBASIC2.59□□□□□ -1.99
RFX3P48380 HMGB1P28-201ENST00000507778 552 ntBASIC2.59□□□□□ -1.99
RFX3P48380 TTC39CP1-201ENST00000512513 755 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.59□□□□□ -1.99
RFX3P48380 RNU6-826P-201ENST00000516827 104 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AC091163.3-201ENST00000518269 1144 ntBASIC2.59□□□□□ -1.99
RFX3P48380 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.59□□□□□ -1.99
RFX3P48380 AC022861.1-201ENST00000522981 663 ntBASIC2.59□□□□□ -1.99
RFX3P48380 HSPE1P20-201ENST00000538133 289 ntBASIC2.59□□□□□ -1.99
RFX3P48380 ELOCP31-201ENST00000540463 467 ntBASIC2.59□□□□□ -1.99
RFX3P48380 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.59□□□□□ -1.99
RFX3P48380 AC090888.1-201ENST00000561335 1141 ntBASIC2.59□□□□□ -1.99
RFX3P48380 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC2.59□□□□□ -1.99
RFX3P48380 AMZ2P1-203ENST00000565833 850 ntBASIC2.59□□□□□ -1.99
RFX3P48380 LARP7P3-201ENST00000579888 337 ntBASIC2.59□□□□□ -1.99
RFX3P48380 BNIP3P27-201ENST00000599991 412 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AC004987.4-201ENST00000603383 338 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AL596245.1-201ENST00000618994 362 ntBASIC2.59□□□□□ -1.99
RFX3P48380 AP000526.1-201ENST00000603308 1388 ntBASIC2.59□□□□□ -2
RFX3P48380 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.59□□□□□ -2
RFX3P48380 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.59□□□□□ -2
RFX3P48380 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.58□□□□□ -2
RFX3P48380 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
RFX3P48380 Y_RNA.408-201ENST00000383987 102 ntBASIC2.58□□□□□ -2
RFX3P48380 AL512633.1-201ENST00000399931 655 ntBASIC2.58□□□□□ -2
RFX3P48380 FO393413.1-201ENST00000402892 195 ntBASIC2.58□□□□□ -2
RFX3P48380 AL355143.1-201ENST00000407101 841 ntBASIC2.58□□□□□ -2
RFX3P48380 RNA5SP492-201ENST00000411330 114 ntBASIC2.58□□□□□ -2
RFX3P48380 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC2.58□□□□□ -2
RFX3P48380 COTL1P1-201ENST00000422309 375 ntBASIC2.58□□□□□ -2
RFX3P48380 MTCO2P5-201ENST00000422621 426 ntBASIC2.58□□□□□ -2
RFX3P48380 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.58□□□□□ -2
RFX3P48380 AL365496.1-201ENST00000426885 215 ntBASIC2.58□□□□□ -2
RFX3P48380 AL139132.1-201ENST00000431587 344 ntBASIC2.58□□□□□ -2
RFX3P48380 RPL36AP6-201ENST00000435770 321 ntBASIC2.58□□□□□ -2
RFX3P48380 TAAR7P-201ENST00000436141 242 ntBASIC2.58□□□□□ -2
RFX3P48380 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.58□□□□□ -2
RFX3P48380 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.58□□□□□ -2
RFX3P48380 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.58□□□□□ -2
RFX3P48380 HSPE1P6-201ENST00000479457 291 ntBASIC2.58□□□□□ -2
RFX3P48380 RNU6-583P-201ENST00000516012 92 ntBASIC2.58□□□□□ -2
RFX3P48380 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.58□□□□□ -2
RFX3P48380 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.58□□□□□ -2
RFX3P48380 HMGB1P14-201ENST00000557424 591 ntBASIC2.58□□□□□ -2
RFX3P48380 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.58□□□□□ -2
RFX3P48380 CYCSP39-201ENST00000565821 309 ntBASIC2.58□□□□□ -2
RFX3P48380 AC106782.4-201ENST00000568264 210 ntBASIC2.58□□□□□ -2
RFX3P48380 HMGB1P6-201ENST00000569046 646 ntBASIC2.58□□□□□ -2
RFX3P48380 MTND3P13-201ENST00000574391 343 ntBASIC2.58□□□□□ -2
RFX3P48380 MIR4513-201ENST00000581077 86 ntBASIC2.58□□□□□ -2
RFX3P48380 AC005046.1-201ENST00000608515 625 ntBASIC2.58□□□□□ -2
RFX3P48380 AL359198.2-201ENST00000611836 194 ntBASIC2.58□□□□□ -2
RFX3P48380 AL121895.2-201ENST00000619558 447 ntBASIC2.58□□□□□ -2
RFX3P48380 AC006386.2-201ENST00000624491 75 ntBASIC2.58□□□□□ -2
RFX3P48380 AC012005.1-201ENST00000624575 75 ntBASIC2.58□□□□□ -2
RFX3P48380 AC099654.7-201ENST00000635788 2127 ntBASIC2.58□□□□□ -2
RFX3P48380 LINC02211-204ENST00000642024 1070 ntBASIC2.58□□□□□ -2
RFX3P48380 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.58□□□□□ -2
RFX3P48380 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
RFX3P48380 AL079343.1-201ENST00000572358 1771 ntBASIC2.58□□□□□ -2
RFX3P48380 AC005539.1-201ENST00000443768 1479 ntBASIC2.58□□□□□ -2
RFX3P48380 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
RFX3P48380 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
RFX3P48380 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.57□□□□□ -2
RFX3P48380 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
RFX3P48380 RNU5A-1-201ENST00000362698 116 ntBASIC2.57□□□□□ -2
RFX3P48380 AL590084.1-201ENST00000407885 387 ntBASIC2.57□□□□□ -2
RFX3P48380 MIR1290-201ENST00000408735 78 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 140.9 ms