Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC2.62□□□□□ -1.99
BRCA1P38398 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.62□□□□□ -1.99
BRCA1P38398 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.62□□□□□ -1.99
BRCA1P38398 BX664608.1-201ENST00000610519 487 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 AC108479.2-201ENST00000617314 601 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.62□□□□□ -1.99
BRCA1P38398 AC111188.2-201ENST00000529697 1387 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.61□□□□□ -1.99
BRCA1P38398 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
BRCA1P38398 AC110774.1-201ENST00000623567 2018 ntBASIC2.61□□□□□ -1.99
BRCA1P38398 SNORA48.3-201ENST00000391081 134 ntBASIC2.61□□□□□ -1.99
BRCA1P38398 MTCYBP34-201ENST00000439552 670 ntBASIC2.61□□□□□ -1.99
BRCA1P38398 TRBV26-201ENST00000456572 344 ntBASIC2.61□□□□□ -1.99
BRCA1P38398 AC006483.1-201ENST00000487308 313 ntBASIC2.61□□□□□ -1.99
BRCA1P38398 RPL38P4-201ENST00000502376 214 ntBASIC2.61□□□□□ -1.99
BRCA1P38398 HMGB1P22-201ENST00000505315 124 ntBASIC2.61□□□□□ -1.99
BRCA1P38398 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.61□□□□□ -1.99
BRCA1P38398 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC2.61□□□□□ -1.99
BRCA1P38398 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC2.61□□□□□ -1.99
BRCA1P38398 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.61□□□□□ -1.99
BRCA1P38398 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.61□□□□□ -1.99
BRCA1P38398 AC092954.1-201ENST00000609121 445 ntBASIC2.61□□□□□ -1.99
BRCA1P38398 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
BRCA1P38398 SNORD88.1-201ENST00000408684 91 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC2.6□□□□□ -1.99
BRCA1P38398 AL096701.2-201ENST00000416920 238 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 ZNF736P7Y-201ENST00000425158 820 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC2.6□□□□□ -1.99
BRCA1P38398 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC2.6□□□□□ -1.99
BRCA1P38398 AL512661.1-201ENST00000434586 1253 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AC233279.1-201ENST00000455300 423 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC2.6□□□□□ -1.99
BRCA1P38398 HMGN2P16-201ENST00000456802 261 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.6□□□□□ -1.99
BRCA1P38398 AC105914.1-201ENST00000511798 226 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AP003467.2-201ENST00000520175 319 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AC133794.1-201ENST00000602731 914 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.6□□□□□ -1.99
BRCA1P38398 AC073348.1-201ENST00000623002 331 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC2.6□□□□□ -1.99
BRCA1P38398 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
BRCA1P38398 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
BRCA1P38398 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
BRCA1P38398 ZNF849P-201ENST00000594711 1566 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.6□□□□□ -1.99
BRCA1P38398 MIR21-201ENST00000362134 72 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 RNU6-921P-201ENST00000384361 107 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 Y_RNA.540-201ENST00000384638 111 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.6□□□□□ -1.99
BRCA1P38398 BEND7P1-201ENST00000422058 457 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.6□□□□□ -1.99
BRCA1P38398 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.6□□□□□ -1.99
BRCA1P38398 EZH2P1-201ENST00000431167 291 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 MTCYBP31-201ENST00000438855 1122 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AL050341.1-201ENST00000447743 313 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 RPS23P3-201ENST00000470993 430 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AC013828.1-201ENST00000481845 158 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.6□□□□□ -1.99
BRCA1P38398 OR5AK1P-201ENST00000524837 922 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.6□□□□□ -1.99
BRCA1P38398 LSM6P2-201ENST00000552208 177 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC2.6□□□□□ -1.99
BRCA1P38398 AC087481.2-201ENST00000565492 330 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC2.6□□□□□ -1.99
BRCA1P38398 AC013468.1-201ENST00000608680 598 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 VN1R7P-201ENST00000619242 903 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.6□□□□□ -1.99
BRCA1P38398 AC097372.4-201ENST00000625025 466 ntBASIC2.6□□□□□ -1.99
BRCA1P38398 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.59□□□□□ -1.99
BRCA1P38398 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.59□□□□□ -1.99
BRCA1P38398 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
BRCA1P38398 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC2.59□□□□□ -1.99
BRCA1P38398 Y_RNA.116-201ENST00000363292 103 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 MIR583-201ENST00000384846 75 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 MT-TC-201ENST00000387405 66 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 RNA5SP56-201ENST00000410277 118 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 RNU2-47P-201ENST00000410649 186 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.59□□□□□ -1.99
BRCA1P38398 AL035410.1-201ENST00000427409 427 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 RPL31P54-201ENST00000429803 370 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC2.59□□□□□ -1.99
BRCA1P38398 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.59□□□□□ -1.99
BRCA1P38398 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.59□□□□□ -1.99
BRCA1P38398 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.59□□□□□ -1.99
BRCA1P38398 AC078857.1-201ENST00000469870 667 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 AC010285.1-201ENST00000470580 392 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 MTND3P24-201ENST00000506306 329 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.59□□□□□ -1.99
BRCA1P38398 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.59□□□□□ -1.99
BRCA1P38398 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.59□□□□□ -1.99
BRCA1P38398 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.59□□□□□ -1.99
BRCA1P38398 AL110115.1-201ENST00000614396 364 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 AP003122.6-201ENST00000623831 495 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 AC093591.3-201ENST00000634516 308 ntBASIC2.59□□□□□ -1.99
BRCA1P38398 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.59□□□□□ -2
BRCA1P38398 SGO1P2-201ENST00000429458 1589 ntBASIC2.59□□□□□ -2
BRCA1P38398 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.59□□□□□ -2
BRCA1P38398 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
BRCA1P38398 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.59□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms