Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNA5SP56-201ENST00000410277 118 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 NPM1P11-201ENST00000417106 855 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 AC007742.1-201ENST00000425789 329 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC9P31274 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXC9P31274 ELOCP26-201ENST00000436067 329 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 MTND4P32-201ENST00000437189 1237 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 LARP1BP3-201ENST00000437229 869 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 KATNBL1P3-201ENST00000443475 909 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXC9P31274 RPL36AP33-201ENST00000450395 310 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC9P31274 AC006539.3-201ENST00000454258 129 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 SUMO2P2-201ENST00000456482 255 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 AC126389.1-201ENST00000477436 290 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC9P31274 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXC9P31274 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC9P31274 AC093809.1-201ENST00000509155 340 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 OR5BM1P-201ENST00000512021 366 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 AC117532.1-201ENST00000514638 323 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 RNU4-60P-201ENST00000517239 135 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 AC106038.2-201ENST00000520706 568 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXC9P31274 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC9P31274 OR6C73P-201ENST00000546432 358 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC9P31274 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC9P31274 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC9P31274 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC9P31274 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXC9P31274 AC090186.1-201ENST00000605991 572 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 AC073114.1-201ENST00000612027 490 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXC9P31274 AP003399.1-201ENST00000637534 361 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
HOXC9P31274 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC9P31274 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC9P31274 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC9P31274 MTND5P3-201ENST00000438536 1800 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC9P31274 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC9P31274 U3.6-201ENST00000363622 211 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 U3.11-201ENST00000364476 212 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXC9P31274 MTCO2P5-201ENST00000422621 426 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC9P31274 MTCO1P27-201ENST00000448269 226 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 RPL7P52-201ENST00000449200 742 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 HMGB1P15-201ENST00000453854 435 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 AP000873.1-201ENST00000463987 400 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 RPL31P13-201ENST00000484151 370 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 RN7SL633P-201ENST00000488974 297 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 AC010625.1-201ENST00000511296 403 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC9P31274 RNU4-29P-201ENST00000515943 174 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.79□□□□□ -1.8
HOXC9P31274 AP001004.1-201ENST00000582468 324 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC9P31274 VN1R79P-201ENST00000593540 513 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 AC080013.6-201ENST00000606185 215 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 AC097468.3-201ENST00000607956 456 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 MIR7844-201ENST00000616161 122 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 AL445264.1-201ENST00000621719 171 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 AC091925.2-201ENST00000625059 256 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXC9P31274 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXC9P31274 AC006927.3-201ENST00000638789 384 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HOXC9P31274 PABPC1P9-201ENST00000426076 1612 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 AC097714.1-201ENST00000511272 1647 ntBASIC3.79□□□□□ -1.8
HOXC9P31274 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC9P31274 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC9P31274 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
HOXC9P31274 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC9P31274 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC9P31274 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
HOXC9P31274 U3.12-201ENST00000364498 214 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 MIR3074-201ENST00000384885 81 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 MIR34A-201ENST00000385130 110 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 RNU6-821P-201ENST00000390995 107 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC9P31274 AC109780.2-201ENST00000413467 845 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC9P31274 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC9P31274 AC129850.1-201ENST00000436203 508 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 MUPP-201ENST00000438111 566 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 SDCBPP1-201ENST00000440192 890 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 RN7SL442P-201ENST00000473804 320 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 AL024509.2-201ENST00000493462 493 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC9P31274 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC9P31274 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
HOXC9P31274 AC006390.1-201ENST00000508068 283 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 MTND5P13-201ENST00000513046 1079 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 AC093677.1-201ENST00000514414 678 ntBASIC3.78□□□□□ -1.8
HOXC9P31274 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC9P31274 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC9P31274 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC9P31274 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms