Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 BX510359.5-201ENST00000515651 304 ntBASIC5.2□□□□□ -1.58
MSX1P28360 RNU6-346P-201ENST00000516288 111 ntBASIC5.2□□□□□ -1.58
MSX1P28360 MIR892C-201ENST00000516410 77 ntBASIC5.2□□□□□ -1.58
MSX1P28360 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC5.2□□□□□ -1.58
MSX1P28360 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSX1P28360 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX1P28360 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX1P28360 AC006272.2-201ENST00000594725 163 ntBASIC5.2□□□□□ -1.58
MSX1P28360 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX1P28360 AC009314.1-201ENST00000603871 304 ntBASIC5.2□□□□□ -1.58
MSX1P28360 AP001485.1-201ENST00000604799 199 ntBASIC5.2□□□□□ -1.58
MSX1P28360 AC073657.2-201ENST00000605661 303 ntBASIC5.2□□□□□ -1.58
MSX1P28360 AC009318.2-201ENST00000610917 651 ntBASIC5.2□□□□□ -1.58
MSX1P28360 AC004852.3-201ENST00000614131 326 ntBASIC5.2□□□□□ -1.58
MSX1P28360 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.2□□□□□ -1.58
MSX1P28360 AC018445.2-201ENST00000622987 260 ntBASIC5.2□□□□□ -1.58
MSX1P28360 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.2□□□□□ -1.58
MSX1P28360 AL596275.2-204ENST00000641628 552 ntBASIC5.2□□□□□ -1.58
MSX1P28360 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX1P28360 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSX1P28360 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSX1P28360 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX1P28360 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX1P28360 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.2□□□□□ -1.58
MSX1P28360 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
MSX1P28360 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
MSX1P28360 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
MSX1P28360 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
MSX1P28360 OR9K1P-202ENST00000641111 3217 ntBASIC5.19□□□□□ -1.58
MSX1P28360 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
MSX1P28360 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX1P28360 HAUS6P2-201ENST00000433254 2404 ntBASIC5.19□□□□□ -1.58
MSX1P28360 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
MSX1P28360 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
MSX1P28360 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.19□□□□□ -1.58
MSX1P28360 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX1P28360 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
MSX1P28360 AC139769.1-204ENST00000472297 1931 ntBASIC5.19□□□□□ -1.58
MSX1P28360 AC007785.2-201ENST00000598627 1916 ntBASIC5.19□□□□□ -1.58
MSX1P28360 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
MSX1P28360 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX1P28360 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
MSX1P28360 AC007685.1-201ENST00000329806 452 ntBASIC5.19□□□□□ -1.58
MSX1P28360 RNU6-249P-201ENST00000363016 102 ntBASIC5.19□□□□□ -1.58
MSX1P28360 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
MSX1P28360 RNU2-43P-201ENST00000410306 190 ntBASIC5.19□□□□□ -1.58
MSX1P28360 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC5.19□□□□□ -1.58
MSX1P28360 AC113412.1-201ENST00000425840 504 ntBASIC5.19□□□□□ -1.58
MSX1P28360 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.19□□□□□ -1.58
MSX1P28360 AC007389.2-201ENST00000434630 306 ntBASIC5.19□□□□□ -1.58
MSX1P28360 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.19□□□□□ -1.58
MSX1P28360 GAPDHP58-201ENST00000438477 1006 ntBASIC5.19□□□□□ -1.58
MSX1P28360 PIGFP3-201ENST00000441918 722 ntBASIC5.19□□□□□ -1.58
MSX1P28360 EEF1B2P6-201ENST00000445713 673 ntBASIC5.19□□□□□ -1.58
MSX1P28360 AC090804.1-201ENST00000448870 490 ntBASIC5.19□□□□□ -1.58
MSX1P28360 RN7SKP210-201ENST00000459176 261 ntBASIC5.19□□□□□ -1.58
MSX1P28360 MRPL42P6-201ENST00000486397 371 ntBASIC5.19□□□□□ -1.58
MSX1P28360 DUTP1-201ENST00000493631 470 ntBASIC5.19□□□□□ -1.58
MSX1P28360 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.19□□□□□ -1.58
MSX1P28360 GLUD1P3-202ENST00000508551 200 ntBASIC5.19□□□□□ -1.58
MSX1P28360 RNU6-615P-201ENST00000516065 106 ntBASIC5.19□□□□□ -1.58
MSX1P28360 RNU7-200P-201ENST00000516105 62 ntBASIC5.19□□□□□ -1.58
MSX1P28360 IGKV2-38-201ENST00000517443 247 ntBASIC5.19□□□□□ -1.58
MSX1P28360 IGLV3-30-201ENST00000524362 298 ntBASIC5.19□□□□□ -1.58
MSX1P28360 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX1P28360 AC022884.2-201ENST00000578535 580 ntBASIC5.19□□□□□ -1.58
MSX1P28360 AP000787.2-201ENST00000604432 568 ntBASIC5.19□□□□□ -1.58
MSX1P28360 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX1P28360 CU639417.4-201ENST00000623928 207 ntBASIC5.19□□□□□ -1.58
MSX1P28360 THAP12P5-201ENST00000405864 2275 ntBASIC5.19□□□□□ -1.58
MSX1P28360 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
MSX1P28360 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.19□□□□□ -1.58
MSX1P28360 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
MSX1P28360 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.19□□□□□ -1.58
MSX1P28360 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX1P28360 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
MSX1P28360 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
MSX1P28360 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
MSX1P28360 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
MSX1P28360 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
MSX1P28360 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSX1P28360 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
MSX1P28360 AC114947.2-201ENST00000565748 2125 ntBASIC5.18□□□□□ -1.58
MSX1P28360 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSX1P28360 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
MSX1P28360 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSX1P28360 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.18□□□□□ -1.58
MSX1P28360 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSX1P28360 RNU6-858P-201ENST00000362436 107 ntBASIC5.18□□□□□ -1.58
MSX1P28360 SNORD113-8-201ENST00000363497 74 ntBASIC5.18□□□□□ -1.58
MSX1P28360 U3.7-201ENST00000363668 216 ntBASIC5.18□□□□□ -1.58
MSX1P28360 RNU6-1020P-201ENST00000363684 107 ntBASIC5.18□□□□□ -1.58
MSX1P28360 RN7SKP124-201ENST00000364730 341 ntBASIC5.18□□□□□ -1.58
MSX1P28360 RNA5SP30-201ENST00000365552 115 ntBASIC5.18□□□□□ -1.58
MSX1P28360 RNU1-74P-201ENST00000384108 171 ntBASIC5.18□□□□□ -1.58
MSX1P28360 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.18□□□□□ -1.58
MSX1P28360 SSXP9-201ENST00000417503 292 ntBASIC5.18□□□□□ -1.58
MSX1P28360 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX1P28360 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX1P28360 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms