Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL358232.1-201ENST00000448030 501 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 EPS15P1-201ENST00000448836 336 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 RPS15AP27-201ENST00000449183 343 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 AL133217.1-201ENST00000450980 425 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC4.55□□□□□ -1.68
HMGB1P09429 RN7SL385P-201ENST00000468873 276 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 RPL30P6-201ENST00000475925 342 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 RBM43P1-201ENST00000476891 1081 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 RPL36AP51-201ENST00000487216 318 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 AC105252.1-201ENST00000503089 286 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 BTF3L4P4-201ENST00000506381 449 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.55□□□□□ -1.68
HMGB1P09429 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.55□□□□□ -1.68
HMGB1P09429 RNA5SP165-201ENST00000517142 115 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 AC107934.1-201ENST00000522215 217 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
HMGB1P09429 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.55□□□□□ -1.68
HMGB1P09429 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.55□□□□□ -1.68
HMGB1P09429 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC4.55□□□□□ -1.68
HMGB1P09429 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.55□□□□□ -1.68
HMGB1P09429 AL161798.1-201ENST00000604630 131 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 AC122133.1-201ENST00000613964 233 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 uc_338.12-201ENST00000616344 181 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 AL589994.2-201ENST00000621124 579 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 AC079248.2-201ENST00000623779 326 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HMGB1P09429 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HMGB1P09429 AC092104.1-201ENST00000497346 1441 ntBASIC4.55□□□□□ -1.68
HMGB1P09429 AC092435.3-201ENST00000565538 3654 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 FAM35DP-201ENST00000323387 2712 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HMGB1P09429 HMGN2P8-201ENST00000391458 268 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 FCF1P10-201ENST00000407590 479 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 Y_RNA.625-201ENST00000411256 107 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 RAC1P6-201ENST00000423911 575 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.54□□□□□ -1.68
HMGB1P09429 MTND4P25-201ENST00000441039 533 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC4.54□□□□□ -1.68
HMGB1P09429 NEFMP1-201ENST00000443423 1006 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 RPL23AP14-201ENST00000468281 468 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC4.54□□□□□ -1.68
HMGB1P09429 AC087373.1-201ENST00000524920 491 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.54□□□□□ -1.68
HMGB1P09429 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC4.54□□□□□ -1.68
HMGB1P09429 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.54□□□□□ -1.68
HMGB1P09429 MIR5697-201ENST00000578045 78 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 AC010620.2-201ENST00000600135 313 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 Z99289.3-201ENST00000605586 594 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 RNA5SP196-201ENST00000625967 102 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.54□□□□□ -1.68
HMGB1P09429 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.54□□□□□ -1.68
HMGB1P09429 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HMGB1P09429 MTND5P7-201ENST00000413558 1798 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.54□□□□□ -1.68
HMGB1P09429 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HMGB1P09429 FAM35CP-201ENST00000554755 2470 ntBASIC4.54□□□□□ -1.68
HMGB1P09429 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC4.54□□□□□ -1.68
HMGB1P09429 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HMGB1P09429 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HMGB1P09429 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HMGB1P09429 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.53□□□□□ -1.68
HMGB1P09429 RNU1-89P-201ENST00000384592 164 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
HMGB1P09429 AL139397.2-201ENST00000404529 772 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 HSPE1P8-201ENST00000406997 288 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 RN7SKP220-201ENST00000410611 288 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 AL513477.1-202ENST00000417061 214 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC4.53□□□□□ -1.68
HMGB1P09429 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 Z74696.2-201ENST00000436514 498 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.53□□□□□ -1.68
HMGB1P09429 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.53□□□□□ -1.68
HMGB1P09429 AC099563.1-201ENST00000456086 418 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 AP000797.1-201ENST00000478870 387 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.53□□□□□ -1.68
HMGB1P09429 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC4.53□□□□□ -1.68
HMGB1P09429 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC4.53□□□□□ -1.68
HMGB1P09429 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.53□□□□□ -1.68
HMGB1P09429 PHBP14-201ENST00000512887 367 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 SNORA31.26-201ENST00000517250 137 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC4.53□□□□□ -1.68
HMGB1P09429 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.53□□□□□ -1.68
HMGB1P09429 AC128657.1-201ENST00000549459 145 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.53□□□□□ -1.68
HMGB1P09429 AL360219.1-201ENST00000610230 366 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
HMGB1P09429 AC091953.2-201ENST00000623979 160 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 AC079416.3-201ENST00000624479 549 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.53□□□□□ -1.68
HMGB1P09429 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HMGB1P09429 NCAPGP1-201ENST00000505112 1814 ntBASIC4.53□□□□□ -1.68
HMGB1P09429 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.53□□□□□ -1.68
HMGB1P09429 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HMGB1P09429 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HMGB1P09429 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HMGB1P09429 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
HMGB1P09429 AP000568.1-201ENST00000282964 442 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 MIR372-201ENST00000362225 67 ntBASIC4.52□□□□□ -1.69
HMGB1P09429 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
HMGB1P09429 RNU2-68P-201ENST00000410878 191 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 134.8 ms