Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 USP9YP7-201ENST00000436723 430 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 MTATP6P23-201ENST00000440153 476 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 TPT1P14-201ENST00000448018 505 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AC010655.1-201ENST00000449336 292 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 USP9YP32-201ENST00000452432 430 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 RPL7P23-201ENST00000493874 747 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 RNU6-1095P-201ENST00000516148 108 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 RNA5SP337-201ENST00000517007 109 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AC090572.1-201ENST00000519251 160 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AK6P1-201ENST00000540219 478 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 HMGB1P33-201ENST00000563485 527 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 MIR5685-201ENST00000579080 79 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AC104662.1-201ENST00000604448 511 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AL161756.2-201ENST00000604597 246 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 IGHV3-29-201ENST00000604817 344 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AL160281.1-201ENST00000605307 311 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 MIR98-201ENST00000606724 119 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AC128687.2-201ENST00000609657 566 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AL161734.1-201ENST00000609720 557 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AC112204.3-201ENST00000623822 332 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AC244258.1-201ENST00000637553 1071 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 MTND5P3-201ENST00000438536 1800 ntBASIC3.92□□□□□ -1.78
VPS4AQ9UN37 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
VPS4AQ9UN37 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC138915.3-201ENST00000562908 1389 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 EXOC5P1-201ENST00000510543 1969 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 RNU6-108P-201ENST00000365558 107 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 Y_RNA.372-201ENST00000365599 102 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 RNU1-39P-201ENST00000383897 165 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 Z98941.1-201ENST00000407764 100 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 RHEBP3-201ENST00000411920 351 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 HMGB3P20-201ENST00000417997 600 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 OR1AA1P-201ENST00000419597 916 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AL139415.2-201ENST00000431968 163 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AL596276.1-201ENST00000434465 418 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC002486.1-201ENST00000435098 391 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 MTATP6P30-201ENST00000443540 664 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 RPS3AP12-201ENST00000443616 753 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 HMGB3P22-202ENST00000451823 572 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 NANOGP10-201ENST00000453325 895 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 SNRPGP5-201ENST00000456003 220 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AP000873.1-201ENST00000463987 400 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AF213884.1-201ENST00000488102 463 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC007182.2-201ENST00000489251 402 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC021146.1-201ENST00000511202 716 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AL157687.1-201ENST00000554853 619 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 HSPE1P5-201ENST00000561489 272 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 COX6CP3-201ENST00000580869 223 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC012669.1-201ENST00000603209 283 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AL034351.1-201ENST00000605288 668 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AP001330.5-201ENST00000607176 411 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC103710.2-201ENST00000609912 942 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 AC091953.5-201ENST00000622919 233 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 C2orf27A-204ENST00000623058 969 ntBASIC3.91□□□□□ -1.78
VPS4AQ9UN37 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS4AQ9UN37 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
VPS4AQ9UN37 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.9□□□□□ -1.78
VPS4AQ9UN37 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.78
VPS4AQ9UN37 Y_RNA.88-201ENST00000363029 99 ntBASIC3.9□□□□□ -1.79
VPS4AQ9UN37 RNU6-1249P-201ENST00000363237 111 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms