Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AC022336.2-201ENST00000568966 2538 ntBASIC4.38□□□□□ -1.71
DDX56Q9NY93 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 AC012618.3-205ENST00000637896 1496 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.37□□□□□ -1.71
DDX56Q9NY93 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
DDX56Q9NY93 AL049641.1-201ENST00000441055 1948 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
DDX56Q9NY93 SMIM11P1-201ENST00000369586 178 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 RNU6-946P-201ENST00000383878 107 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 MIR192-201ENST00000384915 110 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
DDX56Q9NY93 AL590704.1-201ENST00000402856 794 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 MIR1183-201ENST00000408856 89 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 RNU4-55P-201ENST00000410731 137 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 BTF3L4P3-201ENST00000418879 476 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 RPS29P17-201ENST00000430795 166 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 AL512844.2-201ENST00000433990 593 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 AF228730.2-201ENST00000438784 848 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 NANOGNBP1-201ENST00000448444 480 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 RPL23AP24-201ENST00000458203 385 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 RNU6-420P-201ENST00000458780 107 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 RPL32P34-201ENST00000486380 400 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 RN7SL691P-201ENST00000494487 301 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 AC025554.1-201ENST00000505641 188 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 AC116562.3-201ENST00000506136 177 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 TTC39CP1-201ENST00000512513 755 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 AC068587.5-201ENST00000528506 175 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 MIR4715-201ENST00000584117 79 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 AC025165.5-201ENST00000602802 578 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 AL021997.1-201ENST00000605757 193 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 AL158209.2-201ENST00000619266 216 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 MTND1P37-201ENST00000636562 264 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 OR5H6-203ENST00000642105 978 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
DDX56Q9NY93 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
DDX56Q9NY93 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
DDX56Q9NY93 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
DDX56Q9NY93 Z82217.1-201ENST00000625157 8149 ntBASIC4.37□□□□□ -1.71
DDX56Q9NY93 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
DDX56Q9NY93 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
DDX56Q9NY93 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
DDX56Q9NY93 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
DDX56Q9NY93 RNU6-179P-201ENST00000363350 107 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 RNU6-188P-201ENST00000364207 107 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 RNU6-1215P-201ENST00000384441 102 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 MTND3P21-201ENST00000433774 331 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 HMGN2P20-201ENST00000437531 273 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 DNAJC19P4-201ENST00000440115 345 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 MTND4P25-201ENST00000441039 533 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 PIGFP3-201ENST00000441918 722 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 PRDX3P3-201ENST00000447765 522 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 RNA5SP49-201ENST00000516450 115 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 RNA5SP519-201ENST00000516480 119 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 RANP9-201ENST00000519957 271 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 TRAV8-5-201ENST00000537369 341 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
DDX56Q9NY93 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 HMGB1P14-201ENST00000557424 591 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 AC007363.1-201ENST00000604736 620 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 BX323046.1-201ENST00000610145 535 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 AC068792.1-201ENST00000621354 417 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 AC006111.3-201ENST00000622137 383 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 MIR6730-201ENST00000622213 67 ntBASIC4.36□□□□□ -1.71
DDX56Q9NY93 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.36□□□□□ -1.71
DDX56Q9NY93 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
DDX56Q9NY93 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
DDX56Q9NY93 MTND5P17-201ENST00000418405 1603 ntBASIC4.35□□□□□ -1.71
DDX56Q9NY93 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
DDX56Q9NY93 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
DDX56Q9NY93 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
DDX56Q9NY93 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
DDX56Q9NY93 Y_RNA.1-201ENST00000352915 104 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms