Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC109583.1-201ENST00000432156 268 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 HMGB1P12-201ENST00000438594 598 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 COX6CP12-201ENST00000446748 202 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 EPS15P1-201ENST00000448836 336 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 RPL7P52-201ENST00000449200 742 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 TPTE2P5-203ENST00000458118 728 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 RNU6-956P-201ENST00000458868 103 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 snoU13.8-201ENST00000458890 104 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 CENPBD1P1-201ENST00000464061 469 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AP000797.1-201ENST00000478870 387 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 MIR2114-201ENST00000516645 80 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 RPL12P22-201ENST00000519073 490 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 MTCYBP41-201ENST00000528913 1123 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 EEF1B2P4-201ENST00000551398 348 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AL669831.4-202ENST00000590817 238 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 RSL24D1P11-201ENST00000591045 491 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC012557.2-201ENST00000605919 418 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC006329.2-201ENST00000611491 394 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC009878.1-201ENST00000621819 340 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC006386.2-201ENST00000624491 75 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC012005.1-201ENST00000624575 75 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 CR381572.1-201ENST00000625098 102 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC093591.3-201ENST00000634516 308 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AC017071.1-201ENST00000564407 2204 ntBASIC3.82□□□□□ -1.8
DDX4Q9NQI0 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
DDX4Q9NQI0 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 SNORA7.4-201ENST00000384249 137 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 RNU6-769P-201ENST00000384407 104 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 Y_RNA.493-201ENST00000384422 102 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 Y_RNA.553-201ENST00000384670 102 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 RNU6-837P-201ENST00000391056 108 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 RPL5P18-201ENST00000406671 891 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 RPL21P66-201ENST00000426566 466 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 THAP5P1-201ENST00000439089 262 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AL662791.1-201ENST00000441992 928 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 RPL23AP67-201ENST00000465341 474 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 VN1R17P-201ENST00000472048 1090 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 RPL7P47-201ENST00000497299 556 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 MTND3P5-201ENST00000512798 333 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 Y_RNA.655-201ENST00000515919 96 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AC025881.1-201ENST00000518851 512 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AC107954.1-201ENST00000565906 727 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 MIR4307-201ENST00000582802 84 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AC012065.4-201ENST00000602445 679 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 AC090425.2-201ENST00000608818 501 ntBASIC3.81□□□□□ -1.8
DDX4Q9NQI0 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
DDX4Q9NQI0 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
DDX4Q9NQI0 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.8□□□□□ -1.8
DDX4Q9NQI0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
DDX4Q9NQI0 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
DDX4Q9NQI0 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.8□□□□□ -1.8
DDX4Q9NQI0 RNA5SP258-201ENST00000362750 119 ntBASIC3.8□□□□□ -1.8
DDX4Q9NQI0 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.8□□□□□ -1.8
DDX4Q9NQI0 RNU6-1181P-201ENST00000384191 106 ntBASIC3.8□□□□□ -1.8
DDX4Q9NQI0 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.8□□□□□ -1.8
DDX4Q9NQI0 AL513174.1-201ENST00000423182 629 ntBASIC3.8□□□□□ -1.8
DDX4Q9NQI0 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.8□□□□□ -1.8
DDX4Q9NQI0 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.8□□□□□ -1.8
DDX4Q9NQI0 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.8□□□□□ -1.8
DDX4Q9NQI0 ST13P20-201ENST00000447996 1065 ntBASIC3.8□□□□□ -1.8
DDX4Q9NQI0 NANOGNBP1-201ENST00000448444 480 ntBASIC3.8□□□□□ -1.8
DDX4Q9NQI0 AP000542.1-201ENST00000448473 371 ntBASIC3.8□□□□□ -1.8
DDX4Q9NQI0 AL049830.2-201ENST00000480072 201 ntBASIC3.8□□□□□ -1.8
DDX4Q9NQI0 RPS3AP14-201ENST00000483907 780 ntBASIC3.8□□□□□ -1.8
DDX4Q9NQI0 AC096576.1-201ENST00000489014 359 ntBASIC3.8□□□□□ -1.8
DDX4Q9NQI0 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.8□□□□□ -1.8
DDX4Q9NQI0 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms