Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SNORA31.26-201ENST00000517250 137 ntBASIC1.36□□□□□ -2.19
VPS13AQ96RL7 CR383656.8-201ENST00000549046 145 ntBASIC1.36□□□□□ -2.19
VPS13AQ96RL7 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
VPS13AQ96RL7 MIR222-201ENST00000384992 110 ntBASIC1.36□□□□□ -2.19
VPS13AQ96RL7 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
VPS13AQ96RL7 HMGN1P14-201ENST00000412459 517 ntBASIC1.36□□□□□ -2.19
VPS13AQ96RL7 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.36□□□□□ -2.19
VPS13AQ96RL7 BMI1P1-201ENST00000445879 941 ntBASIC1.36□□□□□ -2.19
VPS13AQ96RL7 RNA5SP121-201ENST00000516537 101 ntBASIC1.36□□□□□ -2.19
VPS13AQ96RL7 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.36□□□□□ -2.19
VPS13AQ96RL7 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.36□□□□□ -2.19
VPS13AQ96RL7 AC090970.3-201ENST00000612566 866 ntBASIC1.36□□□□□ -2.19
VPS13AQ96RL7 MTND4P1-201ENST00000457501 1466 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 RNU6-492P-201ENST00000363035 104 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AC092638.1-201ENST00000411966 1275 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.35□□□□□ -2.19
VPS13AQ96RL7 RN7SKP265-201ENST00000516448 223 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 RNA5SP384-201ENST00000516615 116 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AC011890.2-201ENST00000613393 294 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC1.35□□□□□ -2.19
VPS13AQ96RL7 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AC092902.1-201ENST00000486999 259 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.35□□□□□ -2.19
VPS13AQ96RL7 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AL449363.1-201ENST00000617815 186 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 MIR216A-201ENST00000385063 110 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.35□□□□□ -2.19
VPS13AQ96RL7 RPS23P4-201ENST00000487908 423 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AC084364.2-201ENST00000546924 395 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 MAGOH2P-202ENST00000584384 429 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 AC012493.3-201ENST00000604494 112 ntBASIC1.35□□□□□ -2.19
VPS13AQ96RL7 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.19
VPS13AQ96RL7 HMGB1P5-201ENST00000255320 642 ntBASIC1.34□□□□□ -2.19
VPS13AQ96RL7 Y_RNA.274-201ENST00000364714 101 ntBASIC1.34□□□□□ -2.19
VPS13AQ96RL7 RPL26P37-201ENST00000411983 438 ntBASIC1.34□□□□□ -2.19
VPS13AQ96RL7 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS13AQ96RL7 RPS12P24-201ENST00000412619 387 ntBASIC1.34□□□□□ -2.19
VPS13AQ96RL7 AC007560.1-201ENST00000426912 237 ntBASIC1.34□□□□□ -2.19
VPS13AQ96RL7 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS13AQ96RL7 AL078601.1-201ENST00000444542 271 ntBASIC1.34□□□□□ -2.19
VPS13AQ96RL7 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC1.34□□□□□ -2.19
VPS13AQ96RL7 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.34□□□□□ -2.19
VPS13AQ96RL7 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS13AQ96RL7 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.34□□□□□ -2.19
VPS13AQ96RL7 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC1.34□□□□□ -2.2
VPS13AQ96RL7 U3.15-201ENST00000365398 212 ntBASIC1.34□□□□□ -2.2
VPS13AQ96RL7 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC1.34□□□□□ -2.2
VPS13AQ96RL7 WARS2P1-201ENST00000429678 537 ntBASIC1.34□□□□□ -2.2
VPS13AQ96RL7 EZH2P1-201ENST00000431167 291 ntBASIC1.34□□□□□ -2.2
VPS13AQ96RL7 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.34□□□□□ -2.2
VPS13AQ96RL7 RNU6-113P-201ENST00000516653 101 ntBASIC1.34□□□□□ -2.2
VPS13AQ96RL7 RNU1-92P-201ENST00000517017 135 ntBASIC1.34□□□□□ -2.2
VPS13AQ96RL7 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.34□□□□□ -2.2
VPS13AQ96RL7 AL049838.1-201ENST00000563647 981 ntBASIC1.34□□□□□ -2.2
VPS13AQ96RL7 MIR6078-201ENST00000611069 100 ntBASIC1.34□□□□□ -2.2
VPS13AQ96RL7 AC006329.2-201ENST00000611491 394 ntBASIC1.34□□□□□ -2.2
VPS13AQ96RL7 Y_RNA.471-201ENST00000384312 102 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 RPL17P12-201ENST00000413391 526 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 AC005297.2-201ENST00000450430 606 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 AC000367.1-201ENST00000452711 1766 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 MTND5P10-201ENST00000603719 1809 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 AL450326.2-201ENST00000421913 1962 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 Y_RNA.258-201ENST00000364613 105 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 AC007375.1-201ENST00000554513 578 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 MIR320A-201ENST00000385302 82 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 FABP5P3-201ENST00000437960 408 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 RPL23AP62-201ENST00000463396 453 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 KATNBL1P4-201ENST00000503545 918 ntBASIC1.33□□□□□ -2.2
VPS13AQ96RL7 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.33□□□□□ -2.2
VPS13AQ96RL7 AL359851.1-201ENST00000569460 4997 ntBASIC1.32□□□□□ -2.2
VPS13AQ96RL7 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
VPS13AQ96RL7 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
VPS13AQ96RL7 U3.40-201ENST00000408706 208 ntBASIC1.32□□□□□ -2.2
VPS13AQ96RL7 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.32□□□□□ -2.2
VPS13AQ96RL7 CBX3P8-201ENST00000532412 525 ntBASIC1.32□□□□□ -2.2
VPS13AQ96RL7 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.32□□□□□ -2.2
VPS13AQ96RL7 PABPC1P9-201ENST00000426076 1612 ntBASIC1.32□□□□□ -2.2
VPS13AQ96RL7 AP001486.2-201ENST00000561652 5113 ntBASIC1.32□□□□□ -2.2
VPS13AQ96RL7 RNU6-461P-201ENST00000364195 107 ntBASIC1.32□□□□□ -2.2
VPS13AQ96RL7 SEC63P1-201ENST00000425785 1258 ntBASIC1.32□□□□□ -2.2
VPS13AQ96RL7 VN1R108P-201ENST00000431580 830 ntBASIC1.32□□□□□ -2.2
VPS13AQ96RL7 RNU6-1132P-201ENST00000459214 107 ntBASIC1.32□□□□□ -2.2
VPS13AQ96RL7 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms