Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 Y_RNA.5-201ENST00000362334 102 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 RNU6-1115P-201ENST00000362490 106 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 SNORA23-201ENST00000365128 182 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 RNU6-434P-201ENST00000384376 107 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AC110754.1-201ENST00000399740 601 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 RPS12P24-201ENST00000412619 387 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 FAR2P4-202ENST00000425399 584 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AL138785.1-201ENST00000425821 331 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 MRPS18BP2-201ENST00000434310 759 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 RPL35AP21-201ENST00000437667 333 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AL356981.1-201ENST00000454879 684 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 VN1R105P-201ENST00000486595 910 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AC073073.1-201ENST00000493920 463 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 RNU6-1069P-201ENST00000516612 133 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 RNU6-1016P-201ENST00000516689 94 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AP006587.4-201ENST00000526053 529 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 LINC01355-201ENST00000566551 5444 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 MIR4480-201ENST00000582492 71 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AC012669.1-201ENST00000603209 283 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 IGHV3-29-201ENST00000604817 344 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 FAM25E-202ENST00000608562 189 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 MIR6128-201ENST00000615528 109 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 AL731532.2-201ENST00000623542 1953 ntBASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.59□□□□□ -1.67
PTCHD1Q96NR3 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.68
PTCHD1Q96NR3 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.68
PTCHD1Q96NR3 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
PTCHD1Q96NR3 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
PTCHD1Q96NR3 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 RNU6-715P-201ENST00000365204 103 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 GLULP6-201ENST00000399502 913 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AL445189.1-201ENST00000405722 338 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 RNU4-25P-201ENST00000410569 230 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 SNRPEP4-201ENST00000435815 279 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 ARL2BPP10-201ENST00000446487 531 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC000111.2-201ENST00000448200 210 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 OR1H1P-201ENST00000448731 937 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC092324.1-201ENST00000468671 324 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC104472.2-201ENST00000469035 601 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC097473.1-201ENST00000508142 408 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 RNU2-69P-201ENST00000516061 100 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 RNU6-1095P-201ENST00000516148 108 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 Y_RNA.689-201ENST00000516589 107 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 Y_RNA.719-201ENST00000517156 106 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AP003122.3-201ENST00000526316 255 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AL117187.1-201ENST00000555482 181 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 SNORA74C-1-201ENST00000580726 201 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 MIR4680-201ENST00000580906 66 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC006006.1-201ENST00000603082 144 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC174048.1-201ENST00000603389 144 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AL450472.3-201ENST00000615578 367 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC100827.5-201ENST00000615883 426 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 ATP5A1P2-202ENST00000616464 443 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC091953.3-201ENST00000623220 236 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 144.8 ms