Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SDAD1P2-201ENST00000441308 2028 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 OR5BR1P-201ENST00000524992 1330 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS39Q96JC1 RNU6-560P-201ENST00000364007 108 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 SNORA51.4-201ENST00000364993 124 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
VPS39Q96JC1 RNU6-636P-201ENST00000384598 107 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AL031679.1-201ENST00000400616 525 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 MIR887-201ENST00000401258 79 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 HMGB1P17-201ENST00000403495 628 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 RNU6-193P-201ENST00000410977 107 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 RNA5SP492-201ENST00000411330 114 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 RAP1BP1-201ENST00000412709 553 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 AL512844.2-201ENST00000433990 593 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC244505.4-201ENST00000434905 287 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 MTCO2P20-201ENST00000437339 673 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 MTND4P6-201ENST00000438297 472 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 SSXP5-201ENST00000443473 287 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC007327.1-201ENST00000447461 264 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 AL049874.1-201ENST00000489560 388 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC074250.1-201ENST00000511117 192 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC026801.2-201ENST00000515352 425 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 SCARNA15.2-201ENST00000516409 127 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 RNU6-528P-201ENST00000516926 100 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 SLC2A13P1-201ENST00000531560 322 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC090888.1-201ENST00000561335 1141 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AL157394.1-201ENST00000562983 1224 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 MIR3944-201ENST00000581277 108 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 VN1R78P-201ENST00000597393 564 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 BNIP3P26-201ENST00000600827 554 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.03□□□□□ -1.92
VPS39Q96JC1 AL137843.1-201ENST00000605078 385 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AL390208.1-201ENST00000605885 644 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC080013.3-201ENST00000606839 578 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC092106.3-201ENST00000611308 722 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC013470.4-201ENST00000619978 986 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC008264.2-201ENST00000610193 3731 ntBASIC3.03□□□□□ -1.92
VPS39Q96JC1 AC099786.3-201ENST00000565735 1410 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
VPS39Q96JC1 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.02□□□□□ -1.93
VPS39Q96JC1 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS39Q96JC1 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.02□□□□□ -1.93
VPS39Q96JC1 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
VPS39Q96JC1 SNORA63.1-201ENST00000362493 131 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 U8.9-201ENST00000365667 134 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
VPS39Q96JC1 MIR514A1-201ENST00000385133 98 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 MIR325-201ENST00000385260 98 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 BMS1P22-201ENST00000414726 313 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS39Q96JC1 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS39Q96JC1 AL714022.1-201ENST00000439897 151 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 MTND2P24-201ENST00000453434 806 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 RPL7P49-201ENST00000471402 708 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 AC116337.2-201ENST00000477662 156 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 AL358832.1-201ENST00000497800 389 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.02□□□□□ -1.93
VPS39Q96JC1 SEM1P1-201ENST00000506694 209 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 AC124947.2-202ENST00000552735 133 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS39Q96JC1 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
VPS39Q96JC1 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS39Q96JC1 AL606834.2-201ENST00000602954 668 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 AC069200.1-201ENST00000609511 323 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 AL392048.1-201ENST00000613946 534 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
VPS39Q96JC1 AC008443.7-201ENST00000622195 246 ntBASIC3.02□□□□□ -1.93
VPS39Q96JC1 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
VPS39Q96JC1 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
VPS39Q96JC1 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS39Q96JC1 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 AL049641.1-201ENST00000441055 1948 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 MTND5P1-201ENST00000445440 1375 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS39Q96JC1 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS39Q96JC1 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 AL672167.1-206ENST00000356293 943 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 SNORA72.3-201ENST00000365074 132 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS39Q96JC1 RNU6-1122P-201ENST00000384449 107 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 RNVU1-14-201ENST00000384770 164 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 MIR513B-201ENST00000385136 84 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 RNA5SP120-201ENST00000410900 112 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 Z85995.1-201ENST00000415547 335 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 AL139421.1-201ENST00000423010 169 ntBASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms