Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 GSTA11P-201ENST00000452866 669 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC008571.1-201ENST00000467232 300 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 SNORA67.7-201ENST00000516664 135 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AP001804.3-201ENST00000525146 880 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 AP003497.1-201ENST00000528472 562 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AP000857.1-201ENST00000532151 543 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.53□□□□□ -2
CCDC54Q8NEL0 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC128657.1-201ENST00000549459 145 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 MIR3605-201ENST00000583214 100 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 GLUD1P4-201ENST00000590914 418 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC012443.1-201ENST00000605605 231 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC080013.4-201ENST00000607624 649 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 MIR7112-201ENST00000616126 65 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AL138880.2-201ENST00000616214 239 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC006133.1-201ENST00000617106 264 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC109809.1-201ENST00000619665 545 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AP000484.1-201ENST00000620067 1252 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC091953.5-201ENST00000622919 233 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 TAB3P1-202ENST00000452645 1634 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC000403.1-201ENST00000613696 3585 ntBASIC2.53□□□□□ -2.01
CCDC54Q8NEL0 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AL513185.3-201ENST00000433335 1300 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 RPL9P7-201ENST00000330965 580 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 MIR26A1-201ENST00000362205 77 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 SNORD21-201ENST00000383953 95 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 SNORA1.3-201ENST00000384676 136 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AL356057.2-201ENST00000403318 432 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 RNU6-757P-201ENST00000410334 100 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 TXNL1P1-201ENST00000429528 554 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 ZYG11AP1-201ENST00000430329 837 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 OR6K5P-201ENST00000447050 945 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC234775.1-201ENST00000454247 670 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 RPL21P41-201ENST00000459863 264 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC083906.5-201ENST00000503722 328 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 MLLT10P2-201ENST00000506434 249 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC010587.2-201ENST00000511727 448 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 LEF1-218ENST00000512172 598 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 GMPSP1-201ENST00000514075 579 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 MTND5P4-201ENST00000514978 288 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 MRPS36P3-201ENST00000519284 130 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AP002404.1-201ENST00000532005 451 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 HPRT1P3-201ENST00000539521 576 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC022662.1-201ENST00000580252 331 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC023043.3-201ENST00000593113 385 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 DUXAP11-201ENST00000603858 526 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC245389.1-201ENST00000605141 529 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AL357080.1-201ENST00000617394 239 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC013470.4-201ENST00000619978 986 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC231657.1-201ENST00000624313 397 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC099654.7-201ENST00000635788 2127 ntBASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC54Q8NEL0 AC099786.3-201ENST00000565735 1410 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AL079343.1-201ENST00000572358 1771 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 AC011477.1-204ENST00000623416 1325 ntBASIC2.51□□□□□ -2.01
CCDC54Q8NEL0 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms