Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC136777.2-201ENST00000522979 358 ntBASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 AL442163.3-201ENST00000554110 156 ntBASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 AL360012.1-201ENST00000602813 131 ntBASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 AC008962.1-201ENST00000605729 304 ntBASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 AL008718.3-201ENST00000610217 321 ntBASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
NPAS3Q8IXF0 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC004076.2-201ENST00000620532 3323 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 PANDAR-201ENST00000629595 1506 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 SNURFL-201ENST00000309296 343 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 RNU4-44P-201ENST00000363050 141 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 RNA5SP123-201ENST00000363244 119 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 SNORA20-201ENST00000384662 132 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 RNA5SP89-201ENST00000410300 108 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 RNA5SP494-201ENST00000410653 129 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 RNU6-325P-201ENST00000411132 105 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 MTND4LP9-201ENST00000427694 174 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC012123.2-201ENST00000485809 248 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC007686.1-201ENST00000488511 463 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 MIR5701-3-201ENST00000578890 82 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 CPDP1-201ENST00000579660 283 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 MIR5582-201ENST00000579697 68 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 MIR4293-201ENST00000584305 78 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 MIR5701-1-201ENST00000585138 82 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC087783.2-201ENST00000605070 562 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC011476.5-201ENST00000615594 130 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 MIR5701-2-201ENST00000615634 82 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC008873.1-201ENST00000625051 138 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AC090220.1-201ENST00000593078 1699 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AL355834.1-201ENST00000556602 3965 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 EXOC5P1-201ENST00000510543 1969 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 MTND5P9-201ENST00000503854 1755 ntBASIC5.55□□□□□ -1.52
NPAS3Q8IXF0 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 AL355488.2-201ENST00000609909 2850 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 CASC19-204ENST00000641001 2055 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 RNU1-146P-201ENST00000364015 165 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 U8.7-201ENST00000364940 136 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 Y_RNA.358-201ENST00000365491 99 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 Y_RNA.435-201ENST00000384095 112 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 AL354868.1-201ENST00000417077 482 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 EEF1B2P7-201ENST00000451177 676 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 RPS29P22-201ENST00000472363 168 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 RPS4XP22-201ENST00000480755 780 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 AP004242.1-201ENST00000533701 349 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 AC090617.3-201ENST00000573670 475 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 MIR4282-201ENST00000583613 67 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 AC174048.1-201ENST00000603389 144 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 MIR6129-201ENST00000616087 109 ntBASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
NPAS3Q8IXF0 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms